Browse Element(s) Details


OsAffx.5724.1.S1_x_at

Description gb:NM_189115.1
DB_XREF= gi:34905313
GEN=OJ9990_A01.5
TID=OsAffx.5724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ9990_A01.5 (OJ9990_A01.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0659011/11hypothetical protein
LOC_Os10g020901/11retrotransposon protein, putative, LINE subclass
LOC_Os12g319601/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified
LOC_Os08g06590OsAffx.5724.1.S1_x_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.2.S1_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.1.S1_at8/118+3713914..3714991hypothetical protein
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed
LOC_Os08g06610Os.12047.1.S1_a_at11/118+3720558..3721117Mps one binder kinase activator-like 1A, putative
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein
LOC_Os08g06630Os.3407.1.S1_a_at10/118+3726171..3730177Sigma-70 region 2 family protein, expressed
LOC_Os08g06640OsAffx.9796.1.S1_x_at11/118+3733845..3739068expressed protein
LOC_Os08g06640Os.17547.1.S1_at9/118+3733845..3739068expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5724.1.S1_x_at--954--8531Chr08:3713950..3713974 (25 bp)
TGGACGAACGTCTGTCATCCCAAGG
LOC_Os08g06590
OsAffx.5724.1.S1_x_at--785--9133Chr12:19235574..19235593 (20 bp)
TGCGTGTTCGCTGGCTTTGGCTTCA
LOC_Os12g31960
OsAffx.5724.1.S1_x_at--448--1651Chr08:3714047..3714071 (25 bp)
AGCGCTCTGGGCATCCTTATTGGGA
LOC_Os08g06590
OsAffx.5724.1.S1_x_at--191--10771Chr08:3714066..3714090 (25 bp)
TTGGGATGGTTTGAAGGCCCTCGTC
LOC_Os08g06590
OsAffx.5724.1.S1_x_at--717--5731Chr08:3714096..3714120 (25 bp)
GACTGTTTCCGACATGTTCGATGCG
LOC_Os08g06590
OsAffx.5724.1.S1_x_at--881--6251Chr08:3714141..3714165 (25 bp)
GATGGTGAATCGGTGCTCTTCTAGA
LOC_Os08g06590
OsAffx.5724.1.S1_x_at--331--7312Chr08:3714153..3714177 (25 bp)
GTGCTCTTCTAGACTGACCAATGGA
LOC_Os08g06590
OsAffx.5724.1.S1_x_at--1125--5852Chr10:20572815..20572838 (24 bp)
GACCAATGGATTGATGGCCGCTCAA
NONE
OsAffx.5724.1.S1_x_at--739--7191Chr08:3714222..3714243 (22 bp)
GTCGTGCCCCAGTGCATCTGAGTTT
LOC_Os08g06590
OsAffx.5724.1.S1_x_at--169--3871Chr08:3714328..3714349 (22 bp)
CTGAGTTTCTTCGTATTTGGGATGC
LOC_Os08g06590
OsAffx.5724.1.S1_x_at--413--10251Chr08:3714340..3714364 (25 bp)
TTTGGGATGCAGTGTCTCACTTCCA
LOC_Os08g06590
Target Sequence 
TGGACGAACGTCTGTCATCCCAAGGCCTTTGGTGGGTTGGGCATCCCTGACCTCAGGTTGGCTGGGTTTGCCCTGCGTGT
TCGCTGGCTTTGGCTTCAGCGCTCTGGGCATCCTTATTGGGATGGTTTGAAGGCCCTCGTCGAGCGGACTGTTTCCGACA
TGTTCGATGCGTCCACCTTCTTCATGCCGGGGATGGTGAATCGGTGCTCTTCTAGACTGACCAATGGATTGATGGCCGCT
CAATGGCTTCCTTGGCTCCTGATCTCCTCTTCGTCGTGCCCCAGTGCATCTGAGTTTCTTCGTATTTGGGATGCAGTGTC
TCACTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5724.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis