Browse Element(s) Details


OsAffx.576.1.A1_at

Description gb:XM_354009.1
DB_XREF= gi:35189451
TID=OsAffx.576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g088804/11Zinc knuckle family protein
LOC_Os09g072301/11retrotransposon protein, putative, unclassified
LOC_Os12g335301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g333001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08840Os.26495.1.S1_at11/115+4855642..4861593dnaK protein, expressed
LOC_Os05g08850Os.54525.1.S1_x_at11/115+4863414..4865163Cytochrome P450 family protein, expressed
LOC_Os05g08860Os.51345.1.S1_at11/115+4873130..4873834expressed protein
LOC_Os05g08860Os.6152.1.S1_at1/115+4873130..4873834expressed protein
LOC_Os05g08870OsAffx.19542.3.S1_x_at5/115+4877200..4881100retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g08880OsAffx.576.1.A1_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.1.S1_x_at4/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.5954.3.S1_x_at2/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880Os.31535.1.A1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.19540.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.8676.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08880OsAffx.16187.1.S1_at1/115+4882272..4887651Zinc knuckle family protein
LOC_Os05g08890OsAffx.4280.1.A1_at9/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08890Os.53709.1.S1_at1/115+4891869..4898874Transposable element protein, putative, MuDR
LOC_Os05g08900Os.6152.1.S1_at11/115+4903232..4906195expressed protein
LOC_Os05g08900Os.6152.1.S2_at5/115+4903232..4906195expressed protein
LOC_Os05g08900Os.22994.1.S1_at2/115+4903232..4906195expressed protein
LOC_Os05g08910OsAffx.4280.2.S1_at11/115+4912587..4913066expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.576.1.A1_at--679--81321Chr12:20230473..20230715 (25 bp)
GGAAATTTTCGGATATGTCCAAAAG
LOC_Os12g33530
OsAffx.576.1.A1_at--386--79710Chr10:13292011..13292030 (20 bp)
GGACTTTCCGAAAATGACTGCGAAG
NONE
OsAffx.576.1.A1_at--433--89315Chr12:17834406..17834429 (24 bp)
TGACTGCGAAGGCAAAAGTGGTTCT
NONE
OsAffx.576.1.A1_at--80--75124Chr12:17834422..17834446 (25 bp)
GTGGTTCTGTATATTTTCGGACTTG
NONE
OsAffx.576.1.A1_at--62--3953Chr07:6193607..6193627 (21 bp)
CGGACTTGTCCGAAACTGATTTTTG
NONE
OsAffx.576.1.A1_at--453--96114Chr12:17834478..17834502 (25 bp)
TCATCAGTAGAGTCAATTTCGCTTC
NONE
OsAffx.576.1.A1_at--209--60916Chr12:17834487..17834511 (25 bp)
GAGTCAATTTCGCTTCTGTATATTT
NONE
OsAffx.576.1.A1_at--652--9335Chr09:5692588..5692612 (24 bp)
TCGCTTCTGTATATTTTCGAACTTG
NONE
OsAffx.576.1.A1_at--272--9092Chr08:18094715..18094735 (21 bp)
TCGAACTTGTCCGAAAGTGATTTTC
NONE
OsAffx.576.1.A1_at--975--80917Chr10:13292156..13292180 (25 bp)
GGACTTTTCCGAGAACATCCAGAAC
NONE
OsAffx.576.1.A1_at--174--62911Chr11:18965290..18965324 (25 bp)
GATGTTGTTGTTTTCGGACTTGTCC
NONE
Target Sequence 
GGAAATTTTCGGATATGTCCAAAAGTGATTTTCGGACTTTCCGAAAATGACTGCGAAGGCAAAAGTGGTTCTGTATATTT
TCGGACTTGTCCGAAACTGATTTTTGGATTTTCTGAAAATCATCAGTAGAGTCAATTTCGCTTCTGTATATTTTCGAACT
TGTCCGAAAGTGATTTTCGGACTTTTCCGAGAACATCCAGAACGATGTTGTTGTTTTCGGACTTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.576.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis