Browse Element(s) Details


OsAffx.5938.1.S1_at

Description tigr:9636.m02611
TID=OsAffx.5938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2649011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26430OsAffx.29313.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class
LOC_Os08g26430Os.14919.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class
LOC_Os08g26440OsAffx.19677.2.S1_x_at11/118+15978151..15978477hypothetical protein
LOC_Os08g26440OsAffx.19677.2.S1_s_at9/118+15978151..15978477hypothetical protein
LOC_Os08g26450Os.27088.1.A1_x_at1/118+15981234..15986207retrotransposon protein, putative, unclassified
LOC_Os08g26460OsAffx.5936.1.S1_at11/118+15987928..15988389expressed protein
LOC_Os08g26470NANA8+15989709..15989978hypothetical protein
LOC_Os08g26480OsAffx.940.1.S1_x_at1/118+15994449..15995411transposon protein, putative, unclassified
LOC_Os08g26490OsAffx.5938.1.S1_at11/118+15997456..15998193hypothetical protein
LOC_Os08g26500OsAffx.30720.1.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26500Os.30832.2.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26510OsAffx.10528.1.S1_x_at1/118+16008034..16009983retrotransposon protein, putative, unclassified
LOC_Os08g26520OsAffx.29364.1.S1_at9/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_x_at8/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.50824.1.S1_at2/118+16012546..16018852hypothetical protein
LOC_Os08g26520Os.32925.1.S1_at1/118+16012546..16018852hypothetical protein
LOC_Os08g26530NANA8+16020424..16021041hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5938.1.S1_at--285--4131Chr08:15997998..15998022 (25 bp)
CGCATCGGTGAAGCGCCATCATCGG
LOC_Os08g26490
OsAffx.5938.1.S1_at--669--9611Chr08:15997980..15998004 (25 bp)
TCATCGGGAAGGGACGGCAGCACAA
LOC_Os08g26490
OsAffx.5938.1.S1_at--941--831Chr08:15997929..15997953 (25 bp)
ATGGAGGACAGCGACATCCTGGATG
LOC_Os08g26490
OsAffx.5938.1.S1_at--1158--551Chr08:15997914..15997938 (25 bp)
ATCCTGGATGGCAGAGGCACAACCT
LOC_Os08g26490
OsAffx.5938.1.S1_at--594--9391Chr08:15997863..15997887 (25 bp)
TCGTCGAAGAAAAAGCCGGCTGGCT
LOC_Os08g26490
OsAffx.5938.1.S1_at--469--8491Chr08:15997843..15997867 (25 bp)
TGGCTCGCCCGAGGACACTGAGATC
LOC_Os08g26490
OsAffx.5938.1.S1_at--867--4031Chr08:15997732..15997756 (25 bp)
CGAGAAGCAGGCAGGAGTAACCAAT
LOC_Os08g26490
OsAffx.5938.1.S1_at--358--8031Chr08:15997719..15997743 (25 bp)
GGAGTAACCAATGCGGCAAGCCCCA
LOC_Os08g26490
OsAffx.5938.1.S1_at--303--1511Chr08:15997672..15997696 (25 bp)
AGCACCCGGCAAGCTAGTGGCAGCG
LOC_Os08g26490
OsAffx.5938.1.S1_at--233--8031Chr08:15997630..15997654 (25 bp)
GGACTCCACGGCTGGCGTTAGCACA
LOC_Os08g26490
OsAffx.5938.1.S1_at--282--4711Chr08:15997620..15997644 (25 bp)
GCTGGCGTTAGCACATCCGGCACGT
LOC_Os08g26490
Target Sequence 
CGCATCGGTGAAGCGCCATCATCGGGAAGGGACGGCAGCACAACGCCAGCCACTGCCGCAAGGCCCCCGATGGAGGACAG
CGACATCCTGGATGGCAGAGGCACAACCTCCACCTCCGCGGCCAGGGCATCGAGCTCGTCGAAGAAAAAGCCGGCTGGCT
CGCCCGAGGACACTGAGATCCCACCAGAGAGCAGCAGCACGCGGCGCACCGCACAGAGTGGGGAGGCGAGCGGGGAGACT
ACCGGAGCCGATGGCAACGCTGTCGGCGAGAAGCAGGCAGGAGTAACCAATGCGGCAAGCCCCAAAGACGACGCGGCCGG
CGAGGGAGCACCCGGCAAGCTAGTGGCAGCGGGGGCGGCCATGGCCACGGACTCCACGGCTGGCGTTAGCACATCCGGCA
CGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis