Browse Element(s) Details


OsAffx.5977.1.S1_at

Description tigr:9636.m02930
TID=OsAffx.5977.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2951011/11regulatory protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29480OsAffx.22711.4.A1_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29480OsAffx.20380.2.S1_x_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29480OsAffx.22927.1.S1_x_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29480OsAffx.22711.4.A1_x_at1/118+17936289..17938961retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.3.S1_x_at4/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_x_at2/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29490OsAffx.21171.4.S1_at1/118+17939945..17945538retrotransposon protein, putative, unclassified
LOC_Os08g29500Os.15617.1.S1_a_at11/118+17954736..17959137repressor protein, putative, expressed
LOC_Os08g29510OsAffx.5977.1.S1_at11/118+17960560..17962918regulatory protein, putative
LOC_Os08g29520Os.18417.1.A1_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29520Os.47549.1.A1_s_at11/118+17965926..17970068Cytochrome b561 family protein, expressed
LOC_Os08g29530Os.22570.1.S1_at11/118+17970430..17975517Double-stranded RNA binding motif family protein, expressed
LOC_Os08g29540OsAffx.19069.1.S1_at1/118+17977826..17983238retrotransposon protein, putative, unclassified
LOC_Os08g29550OsAffx.29419.3.S1_at11/118+17983779..17985502hypothetical protein
LOC_Os08g29550OsAffx.21161.1.S1_at1/118+17983779..17985502hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5977.1.S1_at--620--8831Chr08:17962379..17962403 (25 bp)
TGATACTGTTCTGCGAGGTGGCGCC
LOC_Os08g29510
OsAffx.5977.1.S1_at--1123--4011Chr08:17962334..17962358 (25 bp)
CGTTCGTGCCGAGCTTCAGGGTCAC
LOC_Os08g29510
OsAffx.5977.1.S1_at--988--5291Chr08:17962261..17962285 (25 bp)
GAAGGGCCTCCGGTACACGTTCACG
LOC_Os08g29510
OsAffx.5977.1.S1_at--1051--7831Chr08:17962250..17962274 (25 bp)
GGTACACGTTCACGGCGCTGAGCAA
LOC_Os08g29510
OsAffx.5977.1.S1_at--307--8911Chr08:17962232..17962256 (25 bp)
TGAGCAAGAACGACACCAAGTCCAT
LOC_Os08g29510
OsAffx.5977.1.S1_at--1085--2151Chr08:17962220..17962244 (25 bp)
ACACCAAGTCCATGCGCGGCCGAGG
LOC_Os08g29510
OsAffx.5977.1.S1_at--835--551Chr08:17960826..17960850 (25 bp)
ATCCTAGGGCCGAGGAAGCTGACGC
LOC_Os08g29510
OsAffx.5977.1.S1_at--464--4491Chr08:17960818..17960842 (25 bp)
GCCGAGGAAGCTGACGCGAGTCTTC
LOC_Os08g29510
OsAffx.5977.1.S1_at--540--4511Chr08:17960706..17960730 (25 bp)
GCCGAGATCCCAACGGCGTTCGTGG
LOC_Os08g29510
OsAffx.5977.1.S1_at--370--1371Chr08:17960654..17960678 (25 bp)
AGAGCATCCAGTTCCGGTGGGAGGT
LOC_Os08g29510
OsAffx.5977.1.S1_at--290--1051Chr08:17960633..17960657 (25 bp)
AGGTGGGCGACGTGCTCATCCTCGA
LOC_Os08g29510
Target Sequence 
TGATACTGTTCTGCGAGGTGGCGCCGCCGGAGGGAGGGGAGACGCCGTTCGTGCCGAGCTTCAGGGTCACGGAGAGGGTG
ATGGAGGAGTTCCCGGAGATGGTGGAGGAGCTCGACGAGAAGGGCCTCCGGTACACGTTCACGGCGCTGAGCAAGAACGA
CACCAAGTCCATGCGCGGCCGAGGGTGGGAGGACGCCTTCGCCACCACCGACAAGGCCGAGGCCGAGAAGAGGGCTCGGG
CGCTAGGGATGGAGGTGGAGTGGCTGGCGAACGGCGGGGCGAGGACGATCCTAGGGCCGAGGAAGCTGACGCGAGTCTTC
CCGGGGCGGCAGGGTCGGCGGATGTGGTTCAACACGGTGGTGGGGATGCACGGGAAGGCACTGAGCTCGGCGACGATGGC
GGACGGCGCCGAGATCCCAACGGCGTTCGTGGCGCGGTGCGGCGAGATCATCGAGGAGGAGAGCATCCAGTTCCGGTGGG
AGGTGGGCGACGTGCTCATCCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis