Browse Element(s) Details


OsAffx.5984.1.S1_s_at

Description tigr:9636.m02983
TID=OsAffx.5984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g108601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10820Os.1404.1.S1_at10/111+5766864..576907460S ribosomal protein L11, putative, expressed
LOC_Os01g10830Os.22640.1.A1_at11/111+5770102..5770992enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g10840Os.18766.1.S1_s_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.18766.1.S1_x_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.48021.1.S1_x_at2/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.52172.2.S1_x_at1/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed
LOC_Os01g10860Os.1408.1.S1_at11/111+5791551..5794476expressed protein
LOC_Os01g10860OsAffx.5984.1.S1_s_at1/111+5791551..5794476expressed protein
LOC_Os01g10870OsAffx.11003.1.S1_s_at11/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.11003.2.S1_at9/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.9832.1.S1_x_at1/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10880NANA1+5804847..5805142expressed protein
LOC_Os01g10890Os.1411.1.S1_at11/111+5806391..5808419CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5984.1.S1_s_at--1138--6291Chr08:18287884..18287908 (25 bp)
GATGAGTTCTCCACAAACCCTTTCC
NONE
OsAffx.5984.1.S1_s_at--400--4372Chr08:18287874..18287898 (25 bp)
CCACAAACCCTTTCCATGCAAAGAA
NONE
OsAffx.5984.1.S1_s_at--15--5471Chr08:18287843..18287867 (25 bp)
GAACTGGATACTCATAGCGGACAAT
NONE
OsAffx.5984.1.S1_s_at--1108--2831Chr08:18287817..18287841 (25 bp)
AAGTAATAGCCAACGTTGCTGCCTC
NONE
OsAffx.5984.1.S1_s_at--470--9111Chr08:18287801..18287825 (25 bp)
TGCTGCCTCCTACATGAGCTTCATG
NONE
OsAffx.5984.1.S1_s_at--1109--3631Chr08:18287783..18287807 (25 bp)
CTTCATGTCCGCCTTGAACTTGGGA
NONE
OsAffx.5984.1.S1_s_at--928--2231Chr08:18287750..18287774 (25 bp)
ACAATCAGGAGTAGGCACAAGAGCG
NONE
OsAffx.5984.1.S1_s_at--777--3231Chr08:18287733..18287757 (25 bp)
CAAGAGCGGCGGTAGATGACTCAAT
NONE
OsAffx.5984.1.S1_s_at--982--331Chr08:18287710..18287734 (25 bp)
ATAAAGAAAGCCACACCCGACAGGT
NONE
OsAffx.5984.1.S1_s_at--537--2171Chr08:18287698..18287722 (25 bp)
ACACCCGACAGGTGGCTGGTCATGG
NONE
OsAffx.5984.1.S1_s_at--727--7351Chr08:18287592..18287616 (25 bp)
GTGAATCGTACTTAACCCTTTCTAT
NONE
Target Sequence 
GATGAGTTCTCCACAAACCCTTTCCATGCAAAGAAAAACAAGAACTGGATACTCATAGCGGACAATGAAGTAATAGCCAA
CGTTGCTGCCTCCTACATGAGCTTCATGTCCGCCTTGAACTTGGGACTATGGCTACAATCAGGAGTAGGCACAAGAGCGG
CGGTAGATGACTCAATAAAGAAAGCCACACCCGACAGGTGGCTGGTCATGGGGGCTATAGCTTTGAGAGGTGAATCGTAC
TTAACCCTTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5984.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis