Browse Element(s) Details


OsAffx.5986.1.S1_at

Description tigr:9637.m02505
TID=OsAffx.5986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2841011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28400Os.51838.1.S1_at11/119+17287992..17290251Alpha-amylase isozyme 3A precursor, putative, expressed
LOC_Os09g28410OsAffx.5986.1.S1_at11/119+17292832..17294528hypothetical protein
LOC_Os09g28420Os.39991.1.A1_at11/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28420Os.33211.1.S1_at1/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28430Os.33211.1.S1_at10/119+17302318..17304046Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g28440Os.52451.1.A1_at11/119+17305099..17306198AP2 domain containing protein, expressed
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed
LOC_Os09g28470Os.55695.1.S1_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470Os.51626.1.S2_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470OsAffx.6892.1.S1_x_at2/119+17318981..17322722Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5986.1.S1_at--1136--3953Chr09:17293944..17293968 (25 bp)
CGGTGCTCGTTGAAGCCGCCCGTCA
LOC_Os09g28410
OsAffx.5986.1.S1_at--850--9411Chr09:17294020..17294044 (25 bp)
TCGTCCTCATCGTCAATTGCGGTAA
LOC_Os09g28410
OsAffx.5986.1.S1_at--635--51Chr09:17294035..17294059 (25 bp)
ATTGCGGTAACCTCATCCAAGTCAT
LOC_Os09g28410
OsAffx.5986.1.S1_at--975--7193Chr09:17294065..17294089 (25 bp)
GTCGTGGCCCATCGTCTACAAGCAG
LOC_Os09g28410
OsAffx.5986.1.S1_at--1068--2452Chr09:17294091..17294115 (25 bp)
AACAAGCCAGCTTCATTCCGGCGGT
LOC_Os09g28410
OsAffx.5986.1.S1_at--947--4331Chr09:17294197..17294221 (25 bp)
CCATGGAACTCGTCGACAGACTGCA
LOC_Os09g28410
OsAffx.5986.1.S1_at--930--2131Chr09:17294212..17294236 (25 bp)
ACAGACTGCAGGCACTTGGCCGTGT
LOC_Os09g28410
OsAffx.5986.1.S1_at--267--4351Chr09:17294257..17294281 (25 bp)
CCAGGCACTTGGTCGAGGTCCTCGA
LOC_Os09g28410
OsAffx.5986.1.S1_at--825--2411Chr09:17294288..17294312 (25 bp)
AAAAACGCGCGTGCCGGTCTTGACG
LOC_Os09g28410
OsAffx.5986.1.S1_at--1161--9371Chr09:17294401..17294425 (25 bp)
TCGAGTTCGGCGGTGCTTTCAACGG
LOC_Os09g28410
OsAffx.5986.1.S1_at--318--4672Chr09:17294410..17294434 (25 bp)
GCGGTGCTTTCAACGGCGAAGTAGA
LOC_Os09g28410
Target Sequence 
CGGTGCTCGTTGAAGCCGCCCGTCACGTACGGCGCCTCTTCCCGTCCCCATCGCATCGCTCATCCTCACCGTCTCCTCGT
CCTCATCGTCAATTGCGGTAACCTCATCCAAGTCATCGCCCGTCGTGGCCCATCGTCTACAAGCAGCAACAAGCCAGCTT
CATTCCGGCGGTGGCGGCGGGCTGAACCACGGTGGCCGTGGCTTTGTGCTGCTGATGCTGCGCCGCAAGCTGCTCTCAAC
CACGCGTCCCCTCCCATGGAACTCGTCGACAGACTGCAGGCACTTGGCCGTGTCCTCCTCGGCAGACGGCAGACCAGGCA
CTTGGTCGAGGTCCTCGAGTCCGCAAAAACGCGCGTGCCGGTCTTGACGGCGGCGCCGCGGCGGAGTGGGCCGGCGCGGG
ACGAGTTGAGGAGGCCGAAGTCGAGGCCAGAGACCATCCCCCGAGAGGCGCTGGTCGTCGAGTTCGGCGGTGCTTTCAAC
GGCGAAGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis