Browse Element(s) Details


OsAffx.6052.1.S1_at

Description tigr:9636.m03718
TID=OsAffx.6052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3702011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36960OsAffx.32149.4.S1_at11/118+23248961..23250595F-box domain containing protein, expressed
LOC_Os08g36970Os.57214.1.S1_at11/118+23251865..23252868expressed protein
LOC_Os08g36970Os.49767.1.S1_x_at1/118+23251865..23252868expressed protein
LOC_Os08g36980Os.24652.1.S1_at11/118+23254066..23255878DnaJ domain containing protein, expressed
LOC_Os08g36994Os.9963.1.S1_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.29567.1.S1_x_at10/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994Os.55095.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.32228.1.A1_x_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g36994OsAffx.4334.1.S1_at1/118+23257863..23270085Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os08g37010OsAffx.6051.1.S1_at11/118+23270207..232713192-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37020OsAffx.6052.1.S1_at11/118+23271738..23274084expressed protein
LOC_Os08g37030OsAffx.17369.1.S1_at11/118+23275789..232767782-Hydroxyisoflavanone dehydratase, putative
LOC_Os08g37040Os.8320.1.S1_at11/118+23278717..23280057esterase, putative, expressed
LOC_Os08g37050OsAffx.17370.1.S1_at11/118+23284331..232852932-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37060Os.22819.1.S1_at10/118+23285897..232873602-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os08g37070OsAffx.17371.1.S1_at11/118+23292694..23293014hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6052.1.S1_at--93--7651Chr08:23273937..23273961 (25 bp)
GGGAGCGAGGCAGCCACCCCGAGAA
LOC_Os08g37020
OsAffx.6052.1.S1_at--529--8951Chr08:23272228..23272252 (25 bp)
TGACTACGCCATCGATCGTGCAAGT
LOC_Os08g37020
OsAffx.6052.1.S1_at--330--9951Chr08:23272224..23272248 (25 bp)
TACGCCATCGATCGTGCAAGTGCTG
LOC_Os08g37020
OsAffx.6052.1.S1_at--779--4431Chr08:23272221..23272245 (25 bp)
GCCATCGATCGTGCAAGTGCTGCTT
LOC_Os08g37020
OsAffx.6052.1.S1_at--1149--5171Chr08:23272209..23272233 (25 bp)
GCAAGTGCTGCTTTTATAACTCGAC
LOC_Os08g37020
OsAffx.6052.1.S1_at--173--7311Chr08:23272205..23272229 (25 bp)
GTGCTGCTTTTATAACTCGACGACT
LOC_Os08g37020
OsAffx.6052.1.S1_at--526--4771Chr08:23272203..23272227 (25 bp)
GCTGCTTTTATAACTCGACGACTCA
LOC_Os08g37020
OsAffx.6052.1.S1_at--858--5151Chr08:23272145..23272169 (25 bp)
GCAACCGGCGTCTGGTCGTGTCCAA
LOC_Os08g37020
OsAffx.6052.1.S1_at--491--7791Chr08:23272132..23272156 (25 bp)
GGTCGTGTCCAACGGCGGCAACCGG
LOC_Os08g37020
OsAffx.6052.1.S1_at--239--9731Chr08:23272092..23272115 (24 bp)
TCAAGAGCAGCGTTCAACAAGCAGA
LOC_Os08g37020
OsAffx.6052.1.S1_at--1068--5931Chr08:23272092..23272111 (20 bp)
GAGCAGCGTTCAACAAGCAGATTTA
LOC_Os08g37020
Target Sequence 
GGGAGCGAGGCAGCCACCCCGAGAACCCCGTCGAGGCCGGCAGCGCCCCACAGCCGACCCTCAGCCTACTCCGGCTTTGT
CCTCGACTCCGCCCCCACTCGCCACCCTGGATCCAGCCGCCGTCTTCGTCTCGGACTCCTCCCGACTTCCCATCCTGACT
ACGCCATCGATCGTGCAAGTGCTGCTTTTATAACTCGACGACTCAACGCTTGGGATTGGGGGCCCATGTCCAACGGCGGC
AACCGGCGTCTGGTCGTGTCCAACGGCGGCAACCGGCGTCTGGCGACCAGGATCAAGAGCAGCGTTCAACAAGCAGATTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis