Browse Element(s) Details


OsAffx.6054.1.S1_at

Description tigr:9636.m03731
TID=OsAffx.6054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3716011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37120OsAffx.12861.3.S1_x_at10/118+23327503..23330255hypothetical protein
LOC_Os08g37120OsAffx.12861.2.S1_x_at9/118+23327503..23330255hypothetical protein
LOC_Os08g37130Os.7631.1.S1_at11/118+23331091..23335550oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os08g37140OsAffx.17373.1.S1_at11/118+23335901..23339725phosphoglycerate mutase family protein, expressed
LOC_Os08g37150Os.50419.1.S1_x_at4/118+23342499..23343393uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os08g37160OsAffx.6054.1.S1_at11/118+23345226..23347866Zinc knuckle family protein
LOC_Os08g37170Os.56188.1.S1_at1/118+23348398..23351511retrotransposon protein, putative, unclassified
LOC_Os08g37180Os.54033.1.S1_at11/118+23359050..23361689Patatin-like phospholipase family protein, expressed
LOC_Os08g37180OsAffx.17216.1.S1_x_at1/118+23359050..23361689Patatin-like phospholipase family protein, expressed
LOC_Os08g37180OsAffx.661.1.S1_x_at1/118+23359050..23361689Patatin-like phospholipase family protein, expressed
LOC_Os08g37190Os.43567.1.S1_x_at6/118+23364852..23366084transposon protein, putative, unclassified
LOC_Os08g37190Os.38172.1.S1_x_at4/118+23364852..23366084transposon protein, putative, unclassified
LOC_Os08g37199NANA8+23369093..23369458NA
LOC_Os08g37210Os.18723.1.S1_at11/118+23370117..23372463Patatin-like phospholipase family protein, expressed
LOC_Os08g37210OsAffx.12972.1.S1_at1/118+23370117..23372463Patatin-like phospholipase family protein, expressed
LOC_Os08g37210OsAffx.17216.1.S1_x_at1/118+23370117..23372463Patatin-like phospholipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6054.1.S1_at--560--2331Chr08:23347250..23347274 (25 bp)
AAAGAGTTCAGCTAATAGGCAGTGA
LOC_Os08g37160
OsAffx.6054.1.S1_at--893--9691Chr08:23347448..23347574 (25 bp)
TCAACAAAGATGCTAACACACAGGT
LOC_Os08g37160
OsAffx.6054.1.S1_at--88--2191Chr08:23347565..23347589 (25 bp)
ACACACAGGTTCTTAGAGACCTAGA
LOC_Os08g37160
OsAffx.6054.1.S1_at--957--5991Chr08:23347580..23347604 (25 bp)
GAGACCTAGAGGTAGCCAGAATAAA
LOC_Os08g37160
OsAffx.6054.1.S1_at--327--8551Chr08:23347641..23347665 (25 bp)
TGGAGAGCTCTTGCAAAAAACAGGG
LOC_Os08g37160
OsAffx.6054.1.S1_at--72--8231Chr08:23347664..23347688 (25 bp)
GGCAACTTGACCCTGAAGTAACTCT
LOC_Os08g37160
OsAffx.6054.1.S1_at--910--5811Chr08:23347672..23347696 (25 bp)
GACCCTGAAGTAACTCTAGATGTAG
LOC_Os08g37160
OsAffx.6054.1.S1_at--332--5731Chr08:23347701..23347725 (25 bp)
GACTGATGAGGAGAATGATTTGGAC
LOC_Os08g37160
OsAffx.6054.1.S1_at--155--731Chr08:23347715..23347739 (25 bp)
ATGATTTGGACTTTGATTTAGCAGA
LOC_Os08g37160
OsAffx.6054.1.S1_at--314--8871Chr08:23347745..23347769 (25 bp)
TGATGAATCATCTTAAGACTCCAAG
LOC_Os08g37160
OsAffx.6054.1.S1_at--820--9551Chr08:23347755..23347779 (25 bp)
TCTTAAGACTCCAAGATCAGGGAAG
LOC_Os08g37160
Target Sequence 
AAAGAGTTCAGCTAATAGGCAGTGAAGAAATGGAATCTCAGGAGTTAGGGGGAGATAACATCAAAGGTAAAGAAGATCAT
AAGAGTGAAGAGGAAGCTGAATTTGAAGAAGGAAAGAAGAACAAGAGGCTCAGAGATAAAGAAGATAAGAAGATATTGGA
AATGGCGATGGAAAGGAAGGAAGCAAAAAATGCATTTATCAACAAAGATGCTAACACACAGGTTCTTAGAGACCTAGAGG
TAGCCAGAATAAATTTGTATAAGAAAACGATGAGGGAAAAGGAAAATAATGGAGAGCTCTTGCAAAAAACAGGGCAACTT
GACCCTGAAGTAACTCTAGATGTAGAAGAGACTGATGAGGAGAATGATTTGGACTTTGATTTAGCAGAAATTTTGATGAA
TCATCTTAAGACTCCAAGATCAGGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis