Browse Element(s) Details


OsAffx.6110.1.S1_at

Description tigr:9636.m04264
TID=OsAffx.6110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4197010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41940Os.56157.1.A1_at11/118+26368324..26373375teosinte glume architecture 1, putative, expressed
LOC_Os08g41940OsAffx.2442.1.S1_x_at1/118+26368324..26373375teosinte glume architecture 1, putative, expressed
LOC_Os08g41950Os.4153.1.S1_a_at11/118+26374337..26379418SRF-type transcription factor family protein, expressed
LOC_Os08g41960OsAffx.17465.1.S1_at10/118+26386299..26388857SRF-type transcription factor family protein, expressed
LOC_Os08g41970OsAffx.6110.1.S1_at10/118+26394119..26395876hypothetical protein
LOC_Os08g41980NANA8+26397475..26397696hypothetical protein
LOC_Os08g41990Os.51459.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g41990Os.10144.1.S1_at11/118+26398553..26401231Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor, putative, expressed
LOC_Os08g42000Os.11535.1.S1_at10/118+26402370..26404462Nuclear transport factor 2, putative, expressed
LOC_Os08g42010Os.48148.1.S1_at10/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42010Os.33974.1.S1_at1/118+26404829..26409992nodulin, putative, expressed
LOC_Os08g42020Os.53300.1.S1_at10/118+26410379..26412570expressed protein
LOC_Os08g42030Os.10394.2.S1_at11/118+26413904..26416963Peroxidase 35 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6110.1.S1_at--749--9351Chr08:26394195..26394219 (25 bp)
TCGACATTGCCAAGCCACACTTAAT
LOC_Os08g41970
OsAffx.6110.1.S1_at--635--8371Chr08:26394232..26394256 (25 bp)
GGCGTTCTCTTTTGTATGTGGACTT
LOC_Os08g41970
OsAffx.6110.1.S1_at--847--8031Chr08:26394337..26394361 (25 bp)
GGAGATCAGGTGGTACCAACTCGAA
LOC_Os08g41970
OsAffx.6110.1.S1_at--266--3771Chr08:26394356..26394380 (25 bp)
CTCGAAGGTGGCTTGGCTATGACAT
LOC_Os08g41970
OsAffx.6110.1.S1_at--179--3531NONE
CATGCGGGCTGCTTCGTCAGAAAGA
NONE
OsAffx.6110.1.S1_at--723--2771Chr08:26395088..26395112 (25 bp)
AAGAGCGTTCAGATGACCCGGTGCC
LOC_Os08g41970
OsAffx.6110.1.S1_at--482--5791Chr08:26395102..26395126 (25 bp)
GACCCGGTGCCTAAGATAAACCACA
LOC_Os08g41970
OsAffx.6110.1.S1_at--656--2011Chr08:26394822..26395225 (25 bp)
ACTCAATGTTGTCTGATTGTCCAAG
LOC_Os08g41970
OsAffx.6110.1.S1_at--667--751Chr08:26395250..26395274 (25 bp)
ATGTCAACGAGCTGAACATCGCTGA
LOC_Os08g41970
OsAffx.6110.1.S1_at--1117--2091Chr08:26395265..26395289 (25 bp)
ACATCGCTGAGCTAAGAGGTTTGGA
LOC_Os08g41970
OsAffx.6110.1.S1_at--1041--6311Chr08:26395502..26395526 (25 bp)
GATGAAGGTGGCTAGTGTGCTCCCC
LOC_Os08g41970
Target Sequence 
TCGACATTGCCAAGCCACACTTAATGCATTTTCATGGGGCGTTCTCTTTTGTATGTGGACTTTATGATGCCATTCAGGAT
GGTGGTTGTGTGAGGTTTGGAGAATGGCTGTGGCATGCCACCCCTGGGGGAGGTGCTTTTGTGGAGATCAGGTGGTACCA
ACTCGAAGGTGGCTTGGCTATGACATGCGGGCTGCTTCGTCAGAAAGAGCGTTCAGATGACCCGGTGCCTAAGATAAACC
ACATTACTCAATGTTGTCTGATTGTCCAAGTTATTATCAGTGTGTTGGAATCAAATGTCAACGAGCTGAACATCGCTGAG
CTAAGAGGTTTGGAGGAAGCGATGACTAATGCTTTGACAGTTGTTAAGAACAAACTGATGATGAAGGTGGCTAGTGTGCT
CCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis