Browse Element(s) Details


OsAffx.6308.1.S1_s_at

Description tigr:9637.m01436
TID=OsAffx.6308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1697011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16930OsAffx.14848.1.S1_at1/119+10352825..10356205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16940OsAffx.10633.1.S1_at4/119+10356666..10359190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16950Os.26900.1.A1_at11/119+10364053..10367261lectin protein kinase, putative, expressed
LOC_Os09g16960OsAffx.29880.1.S1_at10/119+10367725..10370428hypothetical protein
LOC_Os09g16960OsAffx.15850.1.S1_at1/119+10367725..10370428hypothetical protein
LOC_Os09g16970OsAffx.6308.1.S1_s_at11/119+10372584..10374583hypothetical protein
LOC_Os09g16980OsAffx.6309.1.S1_at10/119+10377531..10380849Calcium binding EGF domain containing protein
LOC_Os09g16990OsAffx.29881.1.S1_at11/119+10384915..10385752expressed protein
LOC_Os09g17000Os.39637.1.A1_s_at11/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.29883.1.S1_at10/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000Os.39637.1.A1_at8/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.25903.3.S1_at1/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6308.1.S1_s_at--6--8011Chr09:10374313..10374337 (25 bp)
GGAGGGTGACCTACTTTCAAATGGA
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--243--7751Chr09:10374317..10374341 (25 bp)
GGTGACCTACTTTCAAATGGAGAAG
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--140--1831Chr09:10374348..10374372 (25 bp)
ACGAGGTTGGGCTTGGTGGCACTGC
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--754--7531Chr09:10374363..10374387 (25 bp)
GTGGCACTGCTGTTATTGGGCGTCA
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--86--1991Chr09:10374368..10374392 (25 bp)
ACTGCTGTTATTGGGCGTCATGCTG
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--782--31Chr09:10374377..10374401 (25 bp)
ATTGGGCGTCATGCTGGCGGTGAGC
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--1100--4411Chr09:10374431..10374455 (25 bp)
GCCAGGGACGATCATCTCAAGCTGA
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--550--3471Chr09:10374433..10374457 (25 bp)
CAGGGACGATCATCTCAAGCTGAAA
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--302--6471Chr09:10374481..10374505 (25 bp)
GATAAACTATGATGCTCTTCCCAAG
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--220--2531Chr09:10374485..10374509 (25 bp)
AACTATGATGCTCTTCCCAAGCTGA
LOC_Os09g16970
OsAffx.6308.1.S1_s_at--931--5551Chr09:10374517..10374541 (25 bp)
GAAAGATAAGCCCTACAAAGGTCGT
LOC_Os09g16970
Target Sequence 
GGAGGGTGACCTACTTTCAAATGGAGAAGATGAGCACGAGGTTGGGCTTGGTGGCACTGCTGTTATTGGGCGTCATGCTG
GCGGTGAGCCAGCAATCGGTCGACGCATCCAGCCCCACGCCAGGGACGATCATCTCAAGCTGAAAGCTAAGAAAGATAAG
GCAGAGATGATAAACTATGATGCTCTTCCCAAGCTGAAAGCTAAGAAAGATAAGCCCTACAAAGGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6308.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis