Browse Element(s) Details


OsAffx.6309.1.S1_at

Description tigr:9637.m01437
TID=OsAffx.6309.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1698010/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16930OsAffx.14848.1.S1_at1/119+10352825..10356205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16940OsAffx.10633.1.S1_at4/119+10356666..10359190retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16950Os.26900.1.A1_at11/119+10364053..10367261lectin protein kinase, putative, expressed
LOC_Os09g16960OsAffx.29880.1.S1_at10/119+10367725..10370428hypothetical protein
LOC_Os09g16960OsAffx.15850.1.S1_at1/119+10367725..10370428hypothetical protein
LOC_Os09g16970OsAffx.6308.1.S1_s_at11/119+10372584..10374583hypothetical protein
LOC_Os09g16980OsAffx.6309.1.S1_at10/119+10377531..10380849Calcium binding EGF domain containing protein
LOC_Os09g16990OsAffx.29881.1.S1_at11/119+10384915..10385752expressed protein
LOC_Os09g17000Os.39637.1.A1_s_at11/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.29883.1.S1_at10/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000Os.39637.1.A1_at8/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.25903.3.S1_at1/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6309.1.S1_at--367--4951NONE
GCATTCAGCTGCTACAGTACCGTTA
NONE
OsAffx.6309.1.S1_at--1043--5911Chr09:10378012..10378036 (25 bp)
GAGCTTCACGATATGTCCCTATCAA
LOC_Os09g16980
OsAffx.6309.1.S1_at--1120--4711Chr09:10377968..10377992 (25 bp)
GCTGTCCAGGGAACGATCGGTTACT
LOC_Os09g16980
OsAffx.6309.1.S1_at--920--6391Chr09:10377954..10377978 (25 bp)
GATCGGTTACTTAGATCCCGAGTAT
LOC_Os09g16980
OsAffx.6309.1.S1_at--431--2771Chr09:10377852..10377876 (25 bp)
AAGACCCACCTATAGGACTGATCAG
LOC_Os09g16980
OsAffx.6309.1.S1_at--530--10731Chr09:10377812..10377836 (25 bp)
TTGCATTTTGCATCACTACTGAGAC
LOC_Os09g16980
OsAffx.6309.1.S1_at--813--9911Chr09:10377769..10377793 (25 bp)
TACTGGATCCTCAAGTCCTGACCGA
LOC_Os09g16980
OsAffx.6309.1.S1_at--1103--7651Chr09:10377707..10377731 (25 bp)
GGGATGTGCACTAGAATGACTGGAC
LOC_Os09g16980
OsAffx.6309.1.S1_at--261--5611Chr09:10377685..10377709 (25 bp)
GACAAGATCGCCCTACTATGAGAGA
LOC_Os09g16980
OsAffx.6309.1.S1_at--1095--2731Chr09:10377626..10377650 (25 bp)
AAGAAACTTGCTTCACATGATACAG
LOC_Os09g16980
OsAffx.6309.1.S1_at--788--1171Chr09:10377596..10377620 (25 bp)
AGTAGCCTTGTATCTCAGATGGCAG
LOC_Os09g16980
Target Sequence 
GCATTCAGCTGCTACAGTACCGTTAATAGCAAAGGTATCGGACTTTGGAGCTTCACGATATGTCCCTATCAATCAAACTG
AAGTGACTAATGCTGTCCAGGGAACGATCGGTTACTTAGATCCCGAGTATTATTATACAGGCCATTTAATGGACAAAAGT
GACGTTTTTAGCTTTGGAGTTCTTGTAATAGAACTTCTTACTCGGAAAAGACCCACCTATAGGACTGATCAGGGTGATAG
TTTAGTTTTGCATTTTGCATCACTACTGAGACAAGGACAGCTGGTTGGGATACTGGATCCTCAAGTCCTGACCGAGGGAG
GTGGAGAAGTCATGGAAGTAGCATTACTTGCTGGGATGTGCACTAGAATGACTGGACAAGATCGCCCTACTATGAGAGAA
GTCGAGATGGGACTGGAAAACTTGCGAGTTAGTAAGAAACTTGCTTCACATGATACAGCATCAAGTAGCCTTGTATCTCA
GATGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6309.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis