Browse Element(s) Details


OsAffx.6359.1.S1_s_at

Description tigr:9637.m01871
TID=OsAffx.6359.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2167011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21630OsAffx.2922.1.S1_at1/119+13098443..13102496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21640OsAffx.22947.1.S1_x_at11/119+13103635..13110007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21640OsAffx.22947.2.S1_x_at7/119+13103635..13110007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21640OsAffx.22947.3.S1_x_at5/119+13103635..13110007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21640OsAffx.22947.5.S1_x_at3/119+13103635..13110007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21650NANA9+13112121..13113376retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g21660Os.52013.1.S1_at10/119+13115491..13117743expressed protein
LOC_Os09g21670OsAffx.6359.1.S1_s_at11/119+13125139..13128804expressed protein
LOC_Os09g21680Os.14919.1.S1_at2/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21680Os.56216.1.S1_at1/119+13132111..13136837transposon protein, putative, Mutator sub-class
LOC_Os09g21690OsAffx.17832.1.S1_at10/119+13139059..13141656expressed protein
LOC_Os09g21700OsAffx.17833.1.S1_at11/119+13149888..13151015F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6359.1.S1_s_at--58--2031Chr09:13125705..13125729 (25 bp)
ACTACGCCAGTTAAGGATGCATCAG
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--698--7831Chr09:13125668..13125692 (25 bp)
GGTACACCACTTTTACTAATTGCTT
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--262--2511Chr09:13125605..13125629 (25 bp)
AACATCCAGTGGTATGTGCTCAGAA
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--820--7431Chr09:13125490..13125514 (25 bp)
GTGTATTGGCTTTGGATCATCGCTC
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--254--10251Chr09:13125480..13125504 (25 bp)
TTTGGATCATCGCTCACTGCAGAAG
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--241--2391Chr09:13125439..13125463 (25 bp)
AAACTGCATTTATTTTGTGAGACCT
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--243--1391Chr09:13125349..13125373 (25 bp)
AGACCTACCGGATAACATGACACTT
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--984--671Chr09:13125333..13125357 (25 bp)
ATGACACTTCAGATCGTGGTGCCTC
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--674--7491Chr09:13125318..13125342 (25 bp)
GTGGTGCCTCCATTTTGAATCGTTC
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--1063--5251Chr09:13125302..13125326 (25 bp)
GAATCGTTCACGCTGGACATATGTT
LOC_Os09g21670
OsAffx.6359.1.S1_s_at--440--5231Chr09:13125214..13125238 (25 bp)
GAATATACATTTCCCTTTGTTATTT
LOC_Os09g21670
Target Sequence 
ACTACGCCAGTTAAGGATGCATCAGATCCAATTTATTGGTACACCACTTTTACTAATTGCTTGTTAGAATCTTGTGGAGA
GTTGTTCATGTTATCATTTAAACATCCAGTGGTATGTGCTCAGAAGGTTGTGCAGATTGAAGTTCATAAACTCGATTTAT
CTAGAAGAATTTGGGTGAAAGTTAACACAATTGGTAACAAGGCATTTTTGGTTGAGTGTATTGGCTTTGGATCATCGCTC
ACTGCAGAAGATGTTGGATTGAAGAGAAACTGCATTTATTTTGTGAGACCTAATGATAAGGGTTTGTATGTTTATGACAT
GGAACGAGGAACTACTGTAATGCATAATCCAGGGGCAGACCTACCGGATAACATGACACTTCAGATCGTGGTGCCTCCAT
TTTGAATCGTTCACGCTGGACATATGTTTCCCCTTGTTTTGTTTAATAATGTTCTAATGATACATCTTGAATGTTGGTTG
TTTAAATTATTGAATATACATTTCCCTTTGTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6359.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis