Browse Element(s) Details


OsAffx.6439.1.S1_x_at

Description tigr:9637.m02595
TID=OsAffx.6439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to RING-H2 zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2931010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29239Os.18356.2.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.6436.1.S1_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.18356.1.S1_x_at11/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239OsAffx.1746.1.S1_at2/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.32889.2.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29239Os.10219.1.S1_at1/119+17754699..17770402purine permease, putative, expressed
LOC_Os09g29270Os.51207.1.S1_s_at11/119+17772463..17773353expressed protein
LOC_Os09g29284Os.54337.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29284OsAffx.6437.1.S1_at11/119+17776150..17783626MATE efflux family protein, expressed
LOC_Os09g29300OsAffx.6438.1.S1_at11/119+17784709..17785710expressed protein
LOC_Os09g29310OsAffx.6439.1.S1_x_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29310OsAffx.6439.1.S1_at10/119+17787246..17790986Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29320Os.47130.4.A1_x_at1/119+17797812..17798138retrotransposon protein, putative, unclassified
LOC_Os09g29330NANA9+17798761..17804713retrotransposon protein, putative, unclassified
LOC_Os09g29340Os.28943.1.S1_x_at2/119+17805337..17807577retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6439.1.S1_x_at--1032--8351NONE
GGCGGCAACACGACAACATGCTCGC
NONE
OsAffx.6439.1.S1_x_at--930--4151Chr09:17787664..17787688 (25 bp)
CGCCGCACCTCTTTGTCATGGAATG
LOC_Os09g29310
OsAffx.6439.1.S1_x_at--145--3691Chr09:17787654..17787678 (25 bp)
CTTTGTCATGGAATGCTACCTCGGC
LOC_Os09g29310
OsAffx.6439.1.S1_x_at--362--8511Chr09:17787646..17787670 (25 bp)
TGGAATGCTACCTCGGCGGCGCCGA
LOC_Os09g29310
OsAffx.6439.1.S1_x_at--308--1791Chr09:17787605..17787629 (25 bp)
ACCGAGAACGGCCAACTGCTAGTGA
LOC_Os09g29310
OsAffx.6439.1.S1_x_at--805--5451Chr09:17787600..17787624 (25 bp)
GAACGGCCAACTGCTAGTGATGGCA
LOC_Os09g29310
OsAffx.6439.1.S1_x_at--1154--1211Chr09:17787544..17787568 (25 bp)
AGTTCGCTAGTAGGGTCCGGCTGCT
LOC_Os09g29310
OsAffx.6439.1.S1_x_at--227--9351Chr09:17787541..17787565 (25 bp)
TCGCTAGTAGGGTCCGGCTGCTCAT
LOC_Os09g29310
OsAffx.6439.1.S1_x_at--690--8331Chr09:17787526..17787550 (25 bp)
GGCTGCTCATGGACCCGGCATGGAC
LOC_Os09g29310
OsAffx.6439.1.S1_x_at--357--1832Chr09:17787334..17787358 (25 bp)
ACGCCGATGCTGATGACCACCGGGA
LOC_Os09g29310
OsAffx.6439.1.S1_x_at--123--7891Chr09:17787277..17787301 (25 bp)
GGCTAACGTGGATAACCCTAACATG
LOC_Os09g29310
Target Sequence 
GGCGGCAACACGACAACATGCTCGCCGCGGATCTCCTCACCGTGCTCGCCGCGGACCTCCCCACCAGTGCCGCCGCACCT
CTTTGTCATGGAATGCTACCTCGGCGGCGCCGACGCGTGCGCCGAGCTCACCGAGAACGGCCAACTGCTAGTGATGGCAA
AGAGGCTGGGGGAGGAGGGGCTGATGCAGGAGTTCGCTAGTAGGGTCCGGCTGCTCATGGACCCGGCATGGACGACGCCG
TGGAGGCGGCCGGGAGGAGAAGCGGGGCACGCCGTCGATGCGGCGGCGGAAGAGGAGGAGGACGCCGGCCACCGTACTGC
GGCGGGATCCGGCGGGGACGAGGAGGACGACGATGCTGACAAGGAGGAGAGGATCCCGTCGGGAAGAGCGGGCACGGGGC
ACGCCGATGCTGATGACCACCGGGAGAAGGGAGAGAACAGGGGAAATAAGGAGAGGAGGCTAACGTGGATAACCCTAACA
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6439.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis