Browse Element(s) Details


OsAffx.6495.1.S1_at

Description tigr:9637.m03110
TID=OsAffx.6495.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=kinetochore protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3683010/11SKP1-like protein 1B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36770Os.22661.2.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.22661.3.S1_x_at11/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36770Os.31128.1.S1_x_at2/119+21212817..21222455C2 domain-containing protein, putative, expressed
LOC_Os09g36790OsAffx.30160.1.S1_at11/119+21224026..21224977expressed protein
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed
LOC_Os09g36820OsAffx.18015.1.S1_at11/119+21239269..21242101expressed protein
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein
LOC_Os09g36880Os.14530.2.S1_x_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.14530.1.S1_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.32889.2.S1_at1/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6495.1.S1_at--1079--7191Chr09:21244971..21244995 (25 bp)
GTCGAGGACGAGCTCAAGACGTTCG
LOC_Os09g36830
OsAffx.6495.1.S1_at--1012--3751NONE
CTCTTCGATCTCATCCTGGCTGCAA
NONE
OsAffx.6495.1.S1_at--11--9711Chr09:21243116..21243140 (25 bp)
TCAACATCAAGGGACTGCTGGATCT
LOC_Os09g36830
OsAffx.6495.1.S1_at--226--2091Chr09:21243113..21243137 (25 bp)
ACATCAAGGGACTGCTGGATCTGAC
LOC_Os09g36830
OsAffx.6495.1.S1_at--626--371Chr09:21243111..21243135 (25 bp)
ATCAAGGGACTGCTGGATCTGACCT
LOC_Os09g36830
OsAffx.6495.1.S1_at--42--2891Chr09:21243108..21243132 (25 bp)
AAGGGACTGCTGGATCTGACCTGCC
LOC_Os09g36830
OsAffx.6495.1.S1_at--923--8111Chr09:21243105..21243129 (25 bp)
GGACTGCTGGATCTGACCTGCCAGA
LOC_Os09g36830
OsAffx.6495.1.S1_at--285--9131Chr09:21243101..21243125 (25 bp)
TGCTGGATCTGACCTGCCAGACCGT
LOC_Os09g36830
OsAffx.6495.1.S1_at--329--8571Chr09:21243098..21243122 (25 bp)
TGGATCTGACCTGCCAGACCGTGGC
LOC_Os09g36830
OsAffx.6495.1.S1_at--54--8931Chr09:21243092..21243116 (25 bp)
TGACCTGCCAGACCGTGGCTGACAT
LOC_Os09g36830
OsAffx.6495.1.S1_at--393--4251Chr09:21243089..21243113 (25 bp)
CCTGCCAGACCGTGGCTGACATGAT
LOC_Os09g36830
Target Sequence 
GTCGAGGACGAGCTCAAGACGTTCGACGCCGAGTTCGTCAAGGTCGACCAGTCCACCCTCTTCGATCTCATCCTGGCTGC
AAACTACCTCAACATCAAGGGACTGCTGGATCTGACCTGCCAGACCGTGGCTGACATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis