Browse Element(s) Details


OsAffx.6527.1.S1_at

Description tigr:9637.m03333
TID=OsAffx.6527.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3905011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39010NANA9+22396042..22396463NA
LOC_Os09g39020Os.31867.1.S1_at11/119+22399706..22403882expressed protein
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein
LOC_Os09g39050OsAffx.6527.1.S1_at11/119+22418365..22419612F-box domain containing protein, expressed
LOC_Os09g39060Os.26871.1.S1_at11/119+22420417..22422064Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6527.1.S1_at--547--1831Chr09:22418939..22418963 (25 bp)
ACGCGGGCAGGCAATTCTACAGGGT
LOC_Os09g39050
OsAffx.6527.1.S1_at--72--3191Chr09:22418928..22418952 (25 bp)
CAATTCTACAGGGTGGGCATGCTCA
LOC_Os09g39050
OsAffx.6527.1.S1_at--101--1551Chr09:22418904..22418928 (25 bp)
AGCATAGCCCCAGGCGATGTGTTCA
LOC_Os09g39050
OsAffx.6527.1.S1_at--626--8671Chr09:22418887..22418911 (25 bp)
TGTGTTCACCGGGAGACTCGAGAAG
LOC_Os09g39050
OsAffx.6527.1.S1_at--336--7031Chr09:22418827..22418851 (25 bp)
GTACAGCTACTTCTTCGAGCTCGGC
LOC_Os09g39050
OsAffx.6527.1.S1_at--899--8871Chr09:22418795..22418819 (25 bp)
TGATGTGGGCGTACGTCCATGTCGC
LOC_Os09g39050
OsAffx.6527.1.S1_at--884--8371Chr09:22418764..22418788 (25 bp)
GGCGTTGTTGGATCACGGCCACTAC
LOC_Os09g39050
OsAffx.6527.1.S1_at--357--7711Chr09:22418553..22418577 (25 bp)
GGGTGCGCCTACTTGATGATAGACA
LOC_Os09g39050
OsAffx.6527.1.S1_at--934--951Chr09:22418512..22418536 (25 bp)
AGGACGACGAGGGTTCCTGCTCCTG
LOC_Os09g39050
OsAffx.6527.1.S1_at--303--3811Chr09:22418493..22418517 (25 bp)
CTCCTGGACAGGTGTACGGTGTACA
LOC_Os09g39050
OsAffx.6527.1.S1_at--605--6311Chr09:22418433..22418457 (25 bp)
GATGAACTGCCTCCTGGATGGCTTG
LOC_Os09g39050
Target Sequence 
ACGCGGGCAGGCAATTCTACAGGGTGGGCATGCTCAGCATAGCCCCAGGCGATGTGTTCACCGGGAGACTCGAGAAGAGG
TCGCTGCCGCAGCTGTACGACGAACCTGCCTCGTACAGCTACTTCTTCGAGCTCGGCGGCGAGCTGATGTGGGCGTACGT
CCATGTCGCGGCGGCGGCGTTGTTGGATCACGGCCACTACCCTCTCAAGGGAGGCGACCTGGTGGGAAGCGGCGCGGTGA
GCTTGTGGGTGTACTCGAGGGAGAAGAAGAGCGGGCGGTGGGTGAAGAGGGAGGGGCGGAGGTTGCTGGGCAGCAGCGTT
CTGTTCCTGGGGTGGACGAGCAGCTTCGCCGTGGAGGCGGGGCAGCTGGCCGGCGAGGTGGACGGCGGGTGCGCCTACTT
GATGATAGACAGCGTGGGGCGCGGGCTAGGACGACGAGGGTTCCTGCTCCTGGACAGGTGTACGGTGTACAGGTATAGGT
TGGAGGACGACACCATCACAATGCTGGATGAACTGCCTCCTGGATGGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis