Browse Element(s) Details


OsAffx.6563.1.S1_at

Description tigr:9638.m00229
TID=OsAffx.6563.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0322011/11transposase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03150Os.24831.3.S1_s_at10/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.24831.1.S1_x_at8/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.24831.3.S1_x_at6/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.24831.4.S1_x_at2/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.55127.1.S1_at1/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03160OsAffx.8548.1.S1_at11/1110+1321050..1322111transposon protein, putative, unclassified
LOC_Os10g03170OsAffx.15648.1.S1_at1/1110+1322987..1325433hypothetical protein
LOC_Os10g03180NANA10+1325907..1326950hypothetical protein
LOC_Os10g03190OsAffx.30891.1.S1_x_at2/1110+1331909..1333198hypothetical protein
LOC_Os10g03190OsAffx.7527.1.S1_x_at1/1110+1331909..1333198hypothetical protein
LOC_Os10g03200NANA10+1336788..1338100hypothetical protein
LOC_Os10g03210OsAffx.30774.1.S1_s_at11/1110+1339586..1340655hypothetical protein
LOC_Os10g03220OsAffx.6563.1.S1_at11/1110+1341090..1343329transposase, putative, expressed
LOC_Os10g03230OsAffx.30251.1.S1_at11/1110+1343664..1344464hypothetical protein
LOC_Os10g03240Os.45173.1.S1_x_at6/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240Os.45173.5.S1_x_at4/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03240OsAffx.20877.1.S1_at1/1110+1350764..1356167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03250Os.7393.1.S1_at1/1110+1356435..1360856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03260OsAffx.30252.1.S1_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30252.1.S1_x_at11/1110+1365838..1366663hypothetical protein
LOC_Os10g03260OsAffx.30257.1.S1_x_at1/1110+1365838..1366663hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6563.1.S1_at--349--1111Chr10:1342731..1342755 (25 bp)
AGTGTGCTGCACGTTGTATTGACTC
LOC_Os10g03220
OsAffx.6563.1.S1_at--698--6871Chr10:1342746..1342770 (25 bp)
GTATTGACTCGATGCTTGAAGACAT
LOC_Os10g03220
OsAffx.6563.1.S1_at--815--6311Chr10:1342858..1342882 (25 bp)
GATGCACAAGTTCACCAACCAAAGG
LOC_Os10g03220
OsAffx.6563.1.S1_at--562--1951Chr10:1342895..1342919 (25 bp)
ACTGGGATTACGCATTCCATCACAT
LOC_Os10g03220
OsAffx.6563.1.S1_at--369--10651Chr10:1342909..1342933 (25 bp)
TTCCATCACATCCTACTTGAACTTG
LOC_Os10g03220
OsAffx.6563.1.S1_at--357--6111Chr10:1343067..1343091 (25 bp)
GAGTGCTATATGCTATCAGCAGCCT
LOC_Os10g03220
OsAffx.6563.1.S1_at--281--3411Chr10:1343083..1343107 (25 bp)
CAGCAGCCTGGAGCCAATAGTGGAT
LOC_Os10g03220
OsAffx.6563.1.S1_at--816--7691Chr10:1343127..1343151 (25 bp)
GGGTACTATCTATGGCATCCATTTA
LOC_Os10g03220
OsAffx.6563.1.S1_at--376--5391Chr10:1343206..1343230 (25 bp)
GAAGCATTATCTGCCTATATGGAAT
LOC_Os10g03220
OsAffx.6563.1.S1_at--13--3491Chr10:1343239..1343263 (25 bp)
CAGGAGATGCATGCAATGCCAGTCT
LOC_Os10g03220
OsAffx.6563.1.S1_at--737--5371Chr10:1343264..1343288 (25 bp)
GAAGACACCATTGCACTTAGCTGGT
LOC_Os10g03220
Target Sequence 
AGTGTGCTGCACGTTGTATTGACTCGATGCTTGAAGACATTGAAAATATTACTTTTATCAAGAATATAATAGAGGATGCA
AGGTTAATCACTGCTTTTATATATGGATGTGCACATTTGTTGGACATGATGCACAAGTTCACCAACCAAAGGGATATAGT
CCAAACTGGGATTACGCATTCCATCACATCCTACTTGAACTTGAAGAGCCTTTATGATAAGAGGTTTGAGTTGAAGACTA
TGTTTGTTTCTAGGGATTGGGAGGACAGCAAGTGGTCCAAGGAAGCTGTGGGTGAGAAATTCTATAATCTAGTAGTAAAC
AAGATGTTCTGGCATAGAGTGCTATATGCTATCAGCAGCCTGGAGCCAATAGTGGATGTTCTGAGGTCAGACAGTGGGGT
ACTATCTATGGCATCCATTTATGGTGATCTTGCAAATGCTAAAAAGGAAATTGCATTACGGTTTTTAAACATGGAGAAGC
ATTATCTGCCTATATGGAATATCATAGACAGGAGATGCATGCAATGCCAGTCTGAAGACACCATTGCACTTAGCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis