Browse Element(s) Details


OsAffx.6701.1.S1_s_at

Description tigr:9638.m01611
TID=OsAffx.6701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Got1-like family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1919011/11Got1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19150OsAffx.14524.1.S1_at3/1110+9422992..9423851retrotransposon protein, putative, unclassified
LOC_Os10g19160OsAffx.18298.1.S1_at11/1110+9425766..9429324Leucine Rich Repeat family protein
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19190OsAffx.6701.1.S1_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19190OsAffx.6701.1.S1_s_at11/1110+9445601..9447324Got1-like family protein, expressed
LOC_Os10g19200Os.46580.1.S1_at11/1110+9452629..9453271retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19210OsAffx.8268.1.S1_at11/1110+9454128..9454472retrotransposon protein, putative, unclassified
LOC_Os10g19230OsAffx.20504.1.S1_x_at11/1110+9458096..9460390hypothetical protein
LOC_Os10g19240OsAffx.8267.1.S1_at9/1110+9465925..9467938retrotransposon protein, putative, LINE subclass
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6701.1.S1_s_at--244--7791Chr10:9446367..9446391 (25 bp)
GGTGCTGGCCTTTTGCTTGTTCTAA
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--60--4931Chr10:9446353..9446377 (25 bp)
GCTTGTTCTAATTGGATGGCCCTTT
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--309--10331Chr10:9446068..9446091 (24 bp)
TTTCAGCAGCCATTTGTTGCATCGT
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--531--6671Chr10:9445967..9446076 (25 bp)
GTTGCATCGTACCTTGGAAGCTATC
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--133--6071Chr10:9445933..9445957 (25 bp)
GAGTTCCAGTGTAGGTCTTACCCCA
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--800--6931Chr10:9445907..9445931 (25 bp)
GTAGTGACACAGCAATTCGAGGTTT
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--912--9551Chr10:9445871..9445895 (25 bp)
TCAATTGGTTTTGTAACGCGCCTTC
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--116--8751Chr10:9445771..9445795 (25 bp)
TGTAAATTGATTTTGCCTCCCCTTG
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--260--3811Chr10:9445755..9445779 (25 bp)
CTCCCCTTGGCTTTTAATGACACAA
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--159--6791Chr10:9445693..9445717 (25 bp)
GTTTAGAACCGCCTTGTTGAAGCAG
LOC_Os10g19190
OsAffx.6701.1.S1_s_at--354--1431Chr10:9445670..9445694 (25 bp)
AGAAACTGCATGCTCGTTGTGCTTC
LOC_Os10g19190
Target Sequence 
GGTGCTGGCCTTTTGCTTGTTCTAATTGGATGGCCCTTTTTTGGCATGCTATTAGAGGCATATGGTTTTATTGTACTTTT
CAGTGGATTCTGGCCAACTCTTGTGGTTTTCTTGCAAAAGATTCCTTTCATTGGTTGGATATTTCAGCAGCCATTTGTTG
CATCGTACCTTGGAAGCTATCGAGGAAAAAGAGTTCCAGTGTAGGTCTTACCCCAAGTAGTGACACAGCAATTCGAGGTT
TACATGGCAACCTCAATTGGTTTTGTAACGCGCCTTCCACATTTCTGCCCTTCTCTACCTTTTCAATCACCAAATCTTTA
CAAATGCACATGAATCAGGGTCTTTTTTTTTTTGTAAATTGATTTTGCCTCCCCTTGGCTTTTAATGACACAATACTCTC
TTTAGTAAGCCAGATTCTAGGAAAATTCATGTTTAGAACCGCCTTGTTGAAGCAGAAACTGCATGCTCGTTGTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6701.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis