Browse Element(s) Details


OsAffx.6707.1.S1_at

Description tigr:9638.m01681
TID=OsAffx.6707.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative cytochrome b
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2037011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20310Os.24385.2.S1_at11/1110+9884668..9886941expressed protein
LOC_Os10g20310OsAffx.12964.1.S1_at1/1110+9884668..9886941expressed protein
LOC_Os10g20320NANA10+9894109..9894792transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20330Os.46314.3.S1_at1/1110+9895339..9896384transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20340OsAffx.18308.1.S1_at11/1110+9899331..9899650hypothetical protein
LOC_Os10g20350Os.46698.2.S1_x_at11/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.1.S1_at10/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.3.S1_x_at3/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20360OsAffx.30460.1.S1_at11/1110+9906462..9908158hypothetical protein
LOC_Os10g20370OsAffx.6707.1.S1_at11/1110+9909974..9910438hypothetical protein
LOC_Os10g20380Os.46698.2.S1_x_at4/1110+9911239..9912608TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os10g20390Os.46698.3.S1_x_at10/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20390Os.46698.3.S1_at8/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20400OsAffx.8254.1.S1_at11/1110+9927408..9930812retrotransposon protein, putative, unclassified
LOC_Os10g20410Os.45976.1.S1_x_at5/1110+9931979..9935144transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6707.1.S1_at--619--1091Chr10:9910314..9910338 (25 bp)
AGTGGTCACTGAAAGCCCTTGTCGG
LOC_Os10g20370
OsAffx.6707.1.S1_at--1002--7191Chr10:9910294..9910318 (25 bp)
GTCGGGTTCTTGATATGCTACTTCT
LOC_Os10g20370
OsAffx.6707.1.S1_at--614--9891Chr10:9910276..9910300 (25 bp)
TACTTCTACTACATGCCTAGCCTGG
LOC_Os10g20370
OsAffx.6707.1.S1_at--626--8551Chr10:9910254..9910278 (25 bp)
TGGAGGCGCTGTGCTACCTATGCTC
LOC_Os10g20370
OsAffx.6707.1.S1_at--30--911Chr10:9910224..9910248 (25 bp)
AGGCGGATATCCTCACCATTGTCCA
LOC_Os10g20370
OsAffx.6707.1.S1_at--1147--9371Chr10:9910194..9910218 (25 bp)
TCGAGGTTGATTGTTGCACGCGAAC
LOC_Os10g20370
OsAffx.6707.1.S1_at--907--8371Chr10:9910165..9910189 (25 bp)
GGCGTTGGCTCTGGCACCACGAAGA
LOC_Os10g20370
OsAffx.6707.1.S1_at--589--10471Chr10:9910074..9910098 (25 bp)
TTACGCTCTCCTTGAGGTTACGCAA
LOC_Os10g20370
OsAffx.6707.1.S1_at--345--8891Chr10:9910062..9910086 (25 bp)
TGAGGTTACGCAAGATCGCCGGTCT
LOC_Os10g20370
OsAffx.6707.1.S1_at--641--9431Chr10:9910037..9910061 (25 bp)
TCTGTCCACAGAAACGGGTAGTCAT
LOC_Os10g20370
OsAffx.6707.1.S1_at--422--6911Chr10:9910020..9910044 (25 bp)
GTAGTCATTCCCTGAATACCCAGTG
LOC_Os10g20370
Target Sequence 
AGTGGTCACTGAAAGCCCTTGTCGGGTTCTTGATATGCTACTTCTACTACATGCCTAGCCTGGAGGCGCTGTGCTACCTA
TGCTCCACCGAGGCGGATATCCTCACCATTGTCCACCTCATCGAGGTTGATTGTTGCACGCGAACATTTGGCGTTGGCTC
TGGCACCACGAAGACCTCCCCCAGCTGTGCCACGGGGGGACCGGGCCATGCTAACATGGACAGCCTCACCACGGCCATGC
TTACGCTCTCCTTGAGGTTACGCAAGATCGCCGGTCTTCTGTCCACAGAAACGGGTAGTCATTCCCTGAATACCCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis