Browse Element(s) Details


OsAffx.6724.2.S1_at

Description tigr:9638.m01821
TID=OsAffx.6724.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g217202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21700OsAffx.20453.1.S1_at7/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.6812.1.S1_at5/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.52530.1.S1_at1/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21710OsAffx.30486.1.S1_at10/1110+10798197..10801548hypothetical protein
LOC_Os10g21710OsAffx.11259.1.S1_at1/1110+10798197..10801548hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_s_at11/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.1.S1_at9/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_at2/1110+10815682..10818181hypothetical protein
LOC_Os10g21730NANA10+10821625..10825275retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21740OsAffx.30487.1.S1_at11/1110+10827099..10828556hypothetical protein
LOC_Os10g21760NANA10+10835850..10836164retrotransposon protein, putative, unclassified
LOC_Os10g21770OsAffx.30488.1.S1_at10/1110+10839169..10840342hypothetical protein
LOC_Os10g21780OsAffx.18336.1.S1_at11/1110+10841770..10842108hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6724.2.S1_at--392--9071NONE
TGCTTGGATTGGGTGCCTCTGCGAA
NONE
OsAffx.6724.2.S1_at--848--4931NONE
GCTTGGATTGGGTGCCTCTGCGAAC
NONE
OsAffx.6724.2.S1_at--786--3611NONE
CTTGGATTGGGTGCCTCTGCGAACG
NONE
OsAffx.6724.2.S1_at--284--7911NONE
GGATTGGGTGCCTCTGCGAACGTCT
NONE
OsAffx.6724.2.S1_at--35--4091Chr10:10815721..10816238 (25 bp)
CGACCTCATCGTGGTCTTTAGGCCG
LOC_Os10g21720
OsAffx.6724.2.S1_at--597--5831Chr10:10815720..10816237 (25 bp)
GACCTCATCGTGGTCTTTAGGCCGT
LOC_Os10g21720
OsAffx.6724.2.S1_at--459--1711NONE
ACCTCATCGTGGTCTTTAGGCCGTT
NONE
OsAffx.6724.2.S1_at--892--4271NONE
CCTCATCGTGGTCTTTAGGCCGTTT
NONE
OsAffx.6724.2.S1_at--735--3751NONE
CTCATCGTGGTCTTTAGGCCGTTTC
NONE
OsAffx.6724.2.S1_at--512--9611NONE
TCATCGTGGTCTTTAGGCCGTTTCG
NONE
OsAffx.6724.2.S1_at--836--3451NONE
CATCGTGGTCTTTAGGCCGTTTCGT
NONE
Target Sequence 
TGCTTGGATTGGGTGCCTCTGCGAACGTCTATGCCATCGTGGCCGTGGTCTCCAAGGCCACCAGCACGCCAGCACGTCCA
CTGCCATTGCGCCTGCCGCTGCTGTGCTGCCTCCCTCCGGCAAGGACCTCAAGAACTTGGACGCCGACTTCGTCAAGCAG
GCCACCCTCTTCGACCTCATCGTGGTCTTTAGGCCGTTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6724.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis