Browse Element(s) Details


OsAffx.6724.2.S1_s_at

Description tigr:9638.m01821
TID=OsAffx.6724.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2172011/11hypothetical protein
LOC_Os11g269101/11SKP1-like protein 1B, putative, expressed
LOC_Os02g011601/11SKP1-like protein 1B, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21700OsAffx.20453.1.S1_at7/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.6812.1.S1_at5/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21700Os.52530.1.S1_at1/1110+10793015..10797274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g21710OsAffx.30486.1.S1_at10/1110+10798197..10801548hypothetical protein
LOC_Os10g21710OsAffx.11259.1.S1_at1/1110+10798197..10801548hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_s_at11/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.1.S1_at9/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_at2/1110+10815682..10818181hypothetical protein
LOC_Os10g21730NANA10+10821625..10825275retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21740OsAffx.30487.1.S1_at11/1110+10827099..10828556hypothetical protein
LOC_Os10g21760NANA10+10835850..10836164retrotransposon protein, putative, unclassified
LOC_Os10g21770OsAffx.30488.1.S1_at10/1110+10839169..10840342hypothetical protein
LOC_Os10g21780OsAffx.18336.1.S1_at11/1110+10841770..10842108hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6724.2.S1_s_at--384--4471Chr10:10818040..10818064 (25 bp)
GCCTGCCGATTTGCTTGGATTGGGT
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--474--9491Chr10:10816368..10816392 (25 bp)
TCTGCGAACGTCTATGCCATCGTGG
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--388--9151Chr10:10816366..10816390 (25 bp)
TGCGAACGTCTATGCCATCGTGGCC
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--862--5451Chr10:10816363..10816387 (25 bp)
GAACGTCTATGCCATCGTGGCCGTG
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--991--7131Chr10:10816359..10816383 (25 bp)
GTCTATGCCATCGTGGCCGTGGTCT
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--652--4431Chr10:10816353..10816377 (25 bp)
GCCATCGTGGCCGTGGTCTCCAAGG
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--1110--491Chr10:10816350..10816374 (25 bp)
ATCGTGGCCGTGGTCTCCAAGGCCA
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--56--2951Chr10:10816332..10816356 (25 bp)
AAGGCCACCAGCACGCCAGCACGTC
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--915--9191Chr10:10816304..10816328 (25 bp)
TGCCATTGCGCCTGCCGCTGCTGTG
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--830--8691Chr10:10816283..10816307 (25 bp)
TGTGCTGCCTCCCTCCGGCAAGGAC
LOC_Os10g21720
OsAffx.6724.2.S1_s_at--376--5693Chr11:14959618..14959648 (25 bp)
GACTTCGTCAAGCAGGCCACCCTCT
LOC_Os11g26910
Target Sequence 
GCCTGCCGATTTGCTTGGATTGGGTGCCTCTGCGAACGTCTATGCCATCGTGGCCGTGGTCTCCAAGGCCACCAGCACGC
CAGCACGTCCACTGCCATTGCGCCTGCCGCTGCTGTGCTGCCTCCCTCCGGCAAGGACCTCAAGAACTTGGACGCCGACT
TCGTCAAGCAGGCCACCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6724.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis