Browse Element(s) Details


OsAffx.6743.1.S1_at

Description tigr:9638.m01956
TID=OsAffx.6743.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2303011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22980Os.9046.1.S1_x_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.9046.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.16062.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22990NANA10+11658205..11659209Phosphate-induced protein 1 conserved region containing protein
LOC_Os10g23004OsAffx.18355.1.S1_at11/1110+11662463..11665658hypothetical protein
LOC_Os10g23020NANA10+11669997..11670275hypothetical protein
LOC_Os10g23030OsAffx.6743.1.S1_at11/1110+11674593..11678357hypothetical protein
LOC_Os10g23030Os.54455.1.S1_at1/1110+11674593..11678357hypothetical protein
LOC_Os10g23039NANA10+11682308..11682780NA
LOC_Os10g23050Os.46600.1.S1_at11/1110+11684489..11686279Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os10g23060OsAffx.20429.1.S1_at11/1110+11690388..11692922expressed protein
LOC_Os10g23060Os.16804.1.S1_at10/1110+11690388..11692922expressed protein
LOC_Os10g23080OsAffx.20428.1.S1_at11/1110+11697291..11699819hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6743.1.S1_at--310--5091Chr10:11675100..11675124 (25 bp)
GCACCATCACCACGTTAGATCTAAG
LOC_Os10g23030
OsAffx.6743.1.S1_at--1092--6771Chr10:11675087..11675111 (25 bp)
GTTAGATCTAAGGTGGCCTTCCGCT
LOC_Os10g23030
OsAffx.6743.1.S1_at--913--6851Chr10:11675021..11675045 (25 bp)
GTATTCGTAGAACAGGCTCACCACC
LOC_Os10g23030
OsAffx.6743.1.S1_at--84--1331Chr10:11674966..11674990 (25 bp)
AGAGGCACACGACACTGTTGCTCTA
LOC_Os10g23030
OsAffx.6743.1.S1_at--174--2091Chr10:11674876..11674900 (25 bp)
ACATCAGCGACACCTCGGTAATGTC
LOC_Os10g23030
OsAffx.6743.1.S1_at--538--9751Chr10:11674858..11674882 (25 bp)
TAATGTCGAGCCCTAGCCTTGTCGT
LOC_Os10g23030
OsAffx.6743.1.S1_at--945--10811Chr10:11674840..11674864 (25 bp)
TTGTCGTGCTTAGCAGGCTCGCAAA
LOC_Os10g23030
OsAffx.6743.1.S1_at--887--2471Chr10:11674778..11674802 (25 bp)
AACACGATCCTGAGGAGCCTCGGGA
LOC_Os10g23030
OsAffx.6743.1.S1_at--799--4451Chr10:11674762..11674786 (25 bp)
GCCTCGGGAGGCTCACCAAGGAAAG
LOC_Os10g23030
OsAffx.6743.1.S1_at--582--8291Chr10:11674687..11674711 (25 bp)
GGCTTCGCCAACAATGTCCTAGAGA
LOC_Os10g23030
OsAffx.6743.1.S1_at--1076--9251Chr10:11674655..11674679 (25 bp)
TCCTCGCCAACTGCTGCATTTGAAA
LOC_Os10g23030
Target Sequence 
GCACCATCACCACGTTAGATCTAAGGTGGCCTTCCGCTTCCCGAATGACCAGGGCTTCGAGGGCGGCACGAACGGTGGTG
TATTCGTAGAACAGGCTCACCACCCTAGTGCTAGCGCGGTACTCGGGGCGCTCGAGAGGCACACGACACTGTTGCTCTAC
TCCAATCGGCTCGTTGGCTCGCTCCCGCCATCGCTGGGCGGGCTGGCTGCTCTCCGGATGCTCCACATCAGCGACACCTC
GGTAATGTCGAGCCCTAGCCTTGTCGTGCTTAGCAGGCTCGCAAACCTCACCGTGTTCGAGCTCGCGTCCTGCAACCTCA
ACAACACGATCCTGAGGAGCCTCGGGAGGCTCACCAAGGAAAGGGGAGGGCGTGGGGATTGGAAGGACGACCGCCGCCAC
CGCCGTGACCAATGGCTTCGCCAACAATGTCCTAGAGACGCACCCTCCTCGCCAACTGCTGCATTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis