Browse Element(s) Details


OsAffx.6798.1.S1_x_at

Description tigr:9638.m02424
TID=OsAffx.6798.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g285709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28530OsAffx.18427.1.S1_at11/1110+14519149..14519460hypothetical protein
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein
LOC_Os10g28560OsAffx.8119.1.S1_at11/1110+14535028..14535306hypothetical protein
LOC_Os10g28570Os.52595.1.S1_at11/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_x_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.2.S1_at2/1110+14540521..14542762expressed protein
LOC_Os10g28580OsAffx.30572.2.S1_at11/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28580OsAffx.30576.2.S1_x_at1/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28590OsAffx.30576.1.S1_at11/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_x_at7/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_at1/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28600Os.27003.1.S1_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed
LOC_Os10g28600Os.27003.1.S2_a_at11/1110+14567745..14571534pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6798.1.S1_x_at--664--3371Chr10:14542415..14542439 (25 bp)
CAGCCATCCCAGCAAAAAGGAGTTT
LOC_Os10g28570
OsAffx.6798.1.S1_x_at--984--2291Chr10:14542351..14542375 (25 bp)
AAATGTGATCCTGGTAGTCGTTTGG
LOC_Os10g28570
OsAffx.6798.1.S1_x_at--544--9271Chr10:14542343..14542367 (25 bp)
TCCTGGTAGTCGTTTGGAAGGGACA
LOC_Os10g28570
OsAffx.6798.1.S1_x_at--733--5311NONE
GAAGGTTTTGATATAGCATTTGATG
NONE
OsAffx.6798.1.S1_x_at--860--4952Chr10:14494051..14494075 (25 bp)
GCATTTGATGAAGCTATACCAACAT
NONE
OsAffx.6798.1.S1_x_at--613--2512Chr10:14494071..14494095 (25 bp)
AACATCAATTTGGTTCCTCAGCTCT
NONE
OsAffx.6798.1.S1_x_at--830--10672Chr10:14494084..14494293 (25 bp)
TTCCTCAGCTCTTTCCCTGATATAA
NONE
OsAffx.6798.1.S1_x_at--636--4811NONE
GCTCTTTCCCTGATATAAGCTGCAT
NONE
OsAffx.6798.1.S1_x_at--724--9771Chr10:14541670..14541694 (25 bp)
TAAGGCAGATACTAAACTTCATGGG
LOC_Os10g28570
OsAffx.6798.1.S1_x_at--1121--7471Chr10:14541508..14541532 (25 bp)
GTGGGAGTGCCAATATTGAGATCCA
LOC_Os10g28570
OsAffx.6798.1.S1_x_at--166--8871Chr10:14541492..14541516 (25 bp)
TGAGATCCAAAAGGGTTCCACCATC
LOC_Os10g28570
Target Sequence 
CAGCCATCCCAGCAAAAAGGAGTTTAGCAGGCAGTAGGCTAAAGAATTTGATGCAAACTCTCCAAAATGTGATCCTGGTA
GTCGTTTGGAAGGGACAATATTTGACCATTTCAATCTTCTTGAATGTAGAAGGTTTTGATATAGCATTTGATGAAGCTAT
ACCAACATCAATTTGGTTCCTCAGCTCTTTCCCTGATATAAGCTGCATGGCAAGAAGAGCAAAGTTGACAATCAACCTCA
AATTAAGGAAATCCACGATAAATGTGGAACAATTAATACATGTAAGACTAAGGCAGATACTAAACTTCATGGGGGGAAAA
ACTGCATATATCAAGAAGTTTGATGGAACGGTGGGAGTGCCAATATTGAGATCCAAAAGGGTTCCACCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6798.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis