Browse Element(s) Details


OsAffx.7267.1.S1_at

Description tigr:9639.m02870
TID=OsAffx.7267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3160010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31560OsAffx.19105.1.S1_at11/1111+17940840..17942929Leucine Rich Repeat family protein
LOC_Os11g31570Os.7793.1.S1_at11/1111+17945573..17949064expressed protein
LOC_Os11g31579Os.50826.1.S1_at10/1111+17961041..17961332NA
LOC_Os11g31590OsAffx.31248.2.S1_x_at11/1111+17961499..17962926Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g31600OsAffx.7267.1.S1_at10/1111+17967083..17967746hypothetical protein
LOC_Os11g31600OsAffx.7680.1.S1_at1/1111+17967083..17967746hypothetical protein
LOC_Os11g31610OsAffx.31249.1.S1_at1/1111+17971210..17971569hypothetical protein
LOC_Os11g31620Os.24828.1.S1_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.24828.1.S2_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.22714.1.A1_at1/1111+17982586..17988121F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7267.1.S1_at--71--3271Chr11:17967113..17967133 (21 bp)
CAAAACCGTCACTACCAAATGAGGT
LOC_Os11g31600
OsAffx.7267.1.S1_at--690--2991NONE
CACTACCAAATGAGGTTCTTGCCCC
NONE
OsAffx.7267.1.S1_at--619--4211Chr11:17967508..17967532 (25 bp)
CCCCAAATGATGATGAAGGGTGGCT
LOC_Os11g31600
OsAffx.7267.1.S1_at--387--6311Chr11:17967585..17967609 (25 bp)
GATGAGCAAGCCGAGATGTCTAAAC
LOC_Os11g31600
OsAffx.7267.1.S1_at--655--4511Chr11:17967594..17967618 (25 bp)
GCCGAGATGTCTAAACAGGTTGTTA
LOC_Os11g31600
OsAffx.7267.1.S1_at--957--10431Chr11:17967616..17967640 (25 bp)
TTAGTGGTGATGGAGCTTATGCTGC
LOC_Os11g31600
OsAffx.7267.1.S1_at--205--6251Chr11:17967624..17967648 (25 bp)
GATGGAGCTTATGCTGCTGCAGATG
LOC_Os11g31600
OsAffx.7267.1.S1_at--106--9051Chr11:17967659..17967683 (25 bp)
TGCAGATGCTGCTACCGGTGCAGAT
LOC_Os11g31600
OsAffx.7267.1.S1_at--1040--3711Chr11:17967670..17967694 (25 bp)
CTACCGGTGCAGATGGTGGTACTGA
LOC_Os11g31600
OsAffx.7267.1.S1_at--710--7331Chr11:17967676..17967700 (25 bp)
GTGCAGATGGTGGTACTGAAGACAC
LOC_Os11g31600
OsAffx.7267.1.S1_at--748--3851Chr11:17967691..17967715 (25 bp)
CTGAAGACACCAAAGGAGCTGCAAT
LOC_Os11g31600
Target Sequence 
CAAAACCGTCACTACCAAATGAGGTTCTTGCCCCCAAATGATGATGAAGGGTGGCTAGATATCATTGGGGATGAAAAATT
CTACAAGTTGCTGGGTTTGAGGGCTGAGGATGAGCAAGCCGAGATGTCTAAACAGGTTGTTAGTGGTGATGGAGCTTATG
CTGCTGCAGATGGTGTGGGTGCTGCAGATGCTGCTACCGGTGCAGATGGTGGTACTGAAGACACCAAAGGAGCTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis