Browse Element(s) Details


OsAffx.7273.1.S1_at

Description tigr:9639.m02936
TID=OsAffx.7273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At3g26710
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3232011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32270Os.33966.1.S1_at11/1111+18567715..18574453expressed protein
LOC_Os11g32280Os.50214.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_x_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32280OsAffx.31263.1.S1_at11/1111+18574773..18577795acetyltransferase, GNAT family protein, expressed
LOC_Os11g32290NANA11+18581394..18582353exonuclease family protein, expressed
LOC_Os11g32300OsAffx.31264.1.S1_at10/1111+18584311..18586051hypothetical protein
LOC_Os11g32300OsAffx.5045.1.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32300Os.38395.5.S1_at1/1111+18584311..18586051hypothetical protein
LOC_Os11g32310NANA11+18586830..18587222hypothetical protein
LOC_Os11g32320OsAffx.7273.1.S1_at11/1111+18591377..18593822expressed protein
LOC_Os11g32320OsAffx.7273.1.S1_s_at10/1111+18591377..18593822expressed protein
LOC_Os11g32330OsAffx.31267.1.S1_at8/1111+18594423..18596955hypothetical protein
LOC_Os11g32330OsAffx.14013.2.S1_at1/1111+18594423..18596955hypothetical protein
LOC_Os11g32340OsAffx.19117.1.S1_at11/1111+18602728..18603263hypothetical protein
LOC_Os11g32350OsAffx.7274.1.S1_at8/1111+18606675..18608603hypothetical protein
LOC_Os11g32360Os.14956.1.S1_at11/1111+18611153..18615087expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7273.1.S1_at--533--1331Chr11:18593693..18593717 (25 bp)
AGAGGTGTATCCATGTGAGACTCCA
LOC_Os11g32320
OsAffx.7273.1.S1_at--693--1051Chr11:18593695..18593719 (25 bp)
AGGTGTATCCATGTGAGACTCCATT
LOC_Os11g32320
OsAffx.7273.1.S1_at--633--7751Chr11:18593696..18593720 (25 bp)
GGTGTATCCATGTGAGACTCCATTA
LOC_Os11g32320
OsAffx.7273.1.S1_at--937--7431Chr11:18593697..18593721 (25 bp)
GTGTATCCATGTGAGACTCCATTAA
LOC_Os11g32320
OsAffx.7273.1.S1_at--288--7391Chr11:18593707..18593731 (25 bp)
GTGAGACTCCATTAAGATCGTGACA
LOC_Os11g32320
OsAffx.7273.1.S1_at--410--5991Chr11:18593709..18593733 (25 bp)
GAGACTCCATTAAGATCGTGACACA
LOC_Os11g32320
OsAffx.7273.1.S1_at--1027--5711Chr11:18593711..18593735 (25 bp)
GACTCCATTAAGATCGTGACACAAA
LOC_Os11g32320
OsAffx.7273.1.S1_at--822--3811Chr11:18593713..18593737 (25 bp)
CTCCATTAAGATCGTGACACAAATT
LOC_Os11g32320
OsAffx.7273.1.S1_at--1108--6391Chr11:18593722..18593746 (25 bp)
GATCGTGACACAAATTTTCTACCTA
LOC_Os11g32320
OsAffx.7273.1.S1_at--648--9411Chr11:18593724..18593748 (25 bp)
TCGTGACACAAATTTTCTACCTAGG
LOC_Os11g32320
OsAffx.7273.1.S1_at--985--7351Chr11:18593726..18593750 (25 bp)
GTGACACAAATTTTCTACCTAGGAT
LOC_Os11g32320
Target Sequence 
AGAGGTGTATCCATGTGAGACTCCATTAAGATCGTGACACAAATTTTCTACCTAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis