Browse Element(s) Details


OsAffx.7308.1.S1_at

Description tigr:9639.m03243
TID=OsAffx.7308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3602011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35990OsAffx.22452.1.S1_x_at1/1111+20649277..20650409NA
LOC_Os11g36000Os.52228.1.S1_at11/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36000OsAffx.31317.1.S1_at2/1111+20655461..20657747Leucine Rich Repeat family protein, expressed
LOC_Os11g36010OsAffx.31318.1.S1_at10/1111+20661639..20664280hypothetical protein
LOC_Os11g36020OsAffx.7308.1.S1_at11/1111+20674402..20676339Leucine Rich Repeat family protein
LOC_Os11g36030Os.18023.1.S1_at11/1111+20677193..20680968AT hook motif family protein, expressed
LOC_Os11g36050Os.18652.1.S1_at11/1111+20684202..20686422KE2 family protein, expressed
LOC_Os11g36060Os.27270.2.S1_at11/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060Os.27270.1.S1_at10/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36060OsAffx.16487.1.S1_at1/1111+20686991..20696655THUMP domain containing protein, expressed
LOC_Os11g36070Os.18018.1.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.18018.2.S1_at11/1111+20700399..20706011expressed protein
LOC_Os11g36070Os.22735.1.S1_at1/1111+20700399..20706011expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009653biological_processmorphogenesis
GO:0009909biological_processregulation of flower development
GO:0040008biological_processregulation of growth
GO:0050832biological_processdefense response to fungi
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005057molecular_functionreceptor signaling protein activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7308.1.S1_at--488--1271Chr11:20675747..20675771 (25 bp)
AGCTAGGTCCAATGTTTCCTTCGTG
LOC_Os11g36020
OsAffx.7308.1.S1_at--651--7852Chr11:20675818..20675842 (25 bp)
GGTATAACCGATCAACTTCCACATT
LOC_Os11g36020
OsAffx.7308.1.S1_at--832--2131Chr11:20675869..20675893 (25 bp)
ACAGACTTAGTCATATCCTCCAACA
LOC_Os11g36020
OsAffx.7308.1.S1_at--344--252Chr11:20675894..20675918 (25 bp)
ATATCAGTGGTAGCTTGCCAGCAAA
LOC_Os11g36020
OsAffx.7308.1.S1_at--318--9792Chr11:20675994..20676018 (25 bp)
TAACCTCACCTGGTTGGAGATCCAA
LOC_Os11g36020
OsAffx.7308.1.S1_at--800--9072Chr11:20676026..20676050 (25 bp)
TGCTATCAGGGTCTGTGGCATCAAA
LOC_Os11g36020
OsAffx.7308.1.S1_at--26--7971Chr11:20676058..20676082 (25 bp)
GGATCAGCTCCACAACTAGGTTTTA
LOC_Os11g36020
OsAffx.7308.1.S1_at--352--10672Chr11:20676116..20676140 (25 bp)
TTCCAGGTTCTATCTGCGAGTTGCA
LOC_Os11g36020
OsAffx.7308.1.S1_at--668--7631Chr11:20676180..20676204 (25 bp)
GGGAGAATTTCCTCAATGCATTGGG
LOC_Os11g36020
OsAffx.7308.1.S1_at--261--2231Chr11:20676236..20676260 (25 bp)
ACAATAGCTTATCCGGCAAGGTCCC
LOC_Os11g36020
OsAffx.7308.1.S1_at--351--5111Chr11:20676251..20676275 (25 bp)
GCAAGGTCCCGTCTTTTCTGAAAGG
LOC_Os11g36020
Target Sequence 
AGCTAGGTCCAATGTTTCCTTCGTGGCTTCAATGGATGGTGAATATTAAAGAACTTGATATTTGGAGCACAGGTATAACC
GATCAACTTCCACATTGGTTTTGGACAACATTTTCTAAGGCAACAGACTTAGTCATATCCTCCAACAATATCAGTGGTAG
CTTGCCAGCAAATATGGAAACCATGTCACTAGAAAGACTCTATTTAGGTTCAAATCAAATAACCGGTGTAATACCAATCC
TGCCACCTAACCTCACCTGGTTGGAGATCCAAAATAACATGCTATCAGGGTCTGTGGCATCAAAAACCTTTGGATCAGCT
CCACAACTAGGTTTTATGGATCTATCCTCCAACAACATCAAAGGTCATATTCCAGGTTCTATCTGCGAGTTGCAGCACTT
GCAATACTTGAATTTAGCCAACAATCATTTGGAGGGAGAATTTCCTCAATGCATTGGGATGACAGAACTACAGCATTTTA
TCCTAAATAACAATAGCTTATCCGGCAAGGTCCCGTCTTTTCTGAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis