Browse Element(s) Details


OsAffx.7496.1.S1_at

Description tigr:9640.m00517
TID=OsAffx.7496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0597011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05920Os.51064.1.S1_at9/1112+2723050..2725350expressed protein
LOC_Os12g05930OsAffx.7495.1.S1_at11/1112+2731573..2732169Leucine Rich Repeat family protein
LOC_Os12g05940OsAffx.8606.1.S1_s_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31603.1.S1_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31255.1.S1_at1/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05950OsAffx.19511.1.S1_at11/1112+2740006..2740426hypothetical protein
LOC_Os12g05960OsAffx.31604.1.S1_at11/1112+2743306..2744085hypothetical protein
LOC_Os12g05970OsAffx.7496.1.S1_at11/1112+2746577..2749107hypothetical protein
LOC_Os12g05980NANA12+2750933..2751430hypothetical protein
LOC_Os12g05990Os.19369.1.S1_at11/1112+2761324..2762601No apical meristem protein, expressed
LOC_Os12g06010Os.2235.1.S1_a_at11/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.2235.3.S1_x_at9/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.57499.1.S1_x_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06010Os.52007.1.S1_at1/1112+2767413..2776005retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7496.1.S1_at--58--4511Chr12:2747113..2747137 (25 bp)
GCCGAGTACACGTTGCCTAAGATCA
LOC_Os12g05970
OsAffx.7496.1.S1_at--1072--10631Chr12:2747029..2747053 (25 bp)
TTCCGGCCGGGAATTGATCATTCAT
LOC_Os12g05970
OsAffx.7496.1.S1_at--405--6431Chr12:2747014..2747038 (25 bp)
GATCATTCATGGTCGGTTATTTCCG
LOC_Os12g05970
OsAffx.7496.1.S1_at--1144--10791Chr12:2746897..2746921 (25 bp)
TTGTATCGAGGCAAGCTCTACGCTC
LOC_Os12g05970
OsAffx.7496.1.S1_at--728--1551Chr12:2746857..2746881 (25 bp)
AGCTTCTTGTCCATGGGATCATCAA
LOC_Os12g05970
OsAffx.7496.1.S1_at--415--3011Chr12:2746804..2746828 (25 bp)
AATGCAGTACTATCTCGTGCTGAGC
LOC_Os12g05970
OsAffx.7496.1.S1_at--1014--1071Chr12:2746771..2746795 (25 bp)
AGGGCAGTGCATCACCATCCATTGA
LOC_Os12g05970
OsAffx.7496.1.S1_at--988--3571Chr12:2746752..2746776 (25 bp)
CATTGACGCTTCTGGAACGGATACA
LOC_Os12g05970
OsAffx.7496.1.S1_at--1021--691Chr12:2746713..2746737 (25 bp)
ATGAGAGTCGCTACCTTGTTATTTC
LOC_Os12g05970
OsAffx.7496.1.S1_at--652--7771Chr12:2746662..2746686 (25 bp)
GGTGCACAACTAAATATTCGCCTGA
LOC_Os12g05970
OsAffx.7496.1.S1_at--401--91Chr12:2746647..2746671 (25 bp)
ATTCGCCTGACGGTAGTTCTTCCAT
LOC_Os12g05970
Target Sequence 
GCCGAGTACACGTTGCCTAAGATCATCGTGTGCTCGCCGGGCCTCGTCGTCGCCGCCGTCGTCCACTCTACCTGCATCGC
CGCTTTCCGGCCGGGAATTGATCATTCATGGTCGGTTATTTCCGGTGATGAAGTTATGTCGACGACCGGTGGTGATGATG
ATGATGACGACGATGATGATTATCCGTGGATGAGGAGAAAATACGAGGACATATCGTTGTATCGAGGCAAGCTCTACGCT
CTCACTAGCAAGGAGGAGCTTCTTGTCCATGGGATCATCAACGACGACGACATTGACACTGTCAGTGCAAATGCAGTACT
ATCTCGTGCTGAGCATGCGATCAGGGCAGTGCATCACCATCCATTGACGCTTCTGGAACGGATACAAAATTTCAGCTCCG
ATGAGAGTCGCTACCTTGTTATTTCATGCAGTGGCAAGCTGCTGATGATTAGGTGCACAACTAAATATTCGCCTGACGGT
AGTTCTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis