Browse Element(s) Details


OsAffx.7647.1.S1_at

Description tigr:9640.m01995
TID=OsAffx.7647.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polyprotein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2016911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g20150Os.15116.1.S1_at11/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
LOC_Os12g20150Os.51568.1.S1_at1/1112+11724748..11741860chloroplast alpha-glucan water dikinase isoform 3, putative, expressed
LOC_Os12g20169OsAffx.7647.1.S1_at11/1112+11750024..11757293hypothetical protein
LOC_Os12g20169Os.40855.4.S1_x_at2/1112+11750024..11757293hypothetical protein
LOC_Os12g20169OsAffx.28702.1.S1_at1/1112+11750024..11757293hypothetical protein
LOC_Os12g20169Os.40360.1.S1_x_at1/1112+11750024..11757293hypothetical protein
LOC_Os12g20169Os.40855.5.S1_x_at1/1112+11750024..11757293hypothetical protein
LOC_Os12g20190OsAffx.4841.1.S1_at3/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.22699.1.S1_x_at2/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.31699.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.11259.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20190OsAffx.22603.1.S1_at1/1112+11757941..11767653retrotransposon protein, putative, unclassified
LOC_Os12g20200Os.46995.1.S1_x_at2/1112+11777867..11779406retrotransposon protein, putative, unclassified
LOC_Os12g20200Os.46995.1.S1_at2/1112+11777867..11779406retrotransposon protein, putative, unclassified
LOC_Os12g20210NANA12+11780181..11785834retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7647.1.S1_at--104--7171Chr12:11750071..11750095 (25 bp)
GTCTGTTGCGCCGTCATCCAAGTAC
LOC_Os12g20169
OsAffx.7647.1.S1_at--150--9171Chr12:11750077..11750101 (25 bp)
TGCGCCGTCATCCAAGTACGCAGAG
LOC_Os12g20169
OsAffx.7647.1.S1_at--174--2631Chr12:11750269..11750293 (25 bp)
AACCTTGACCCCTCTGAATTTATCA
LOC_Os12g20169
OsAffx.7647.1.S1_at--705--8931Chr12:11750274..11750298 (25 bp)
TGACCCCTCTGAATTTATCATTGTT
LOC_Os12g20169
OsAffx.7647.1.S1_at--937--3111Chr12:11750285..11750309 (25 bp)
AATTTATCATTGTTGAGACCAACAG
LOC_Os12g20169
OsAffx.7647.1.S1_at--112--8571Chr12:11750413..11750437 (25 bp)
TGGTTCGAATGGGTATCGGCTAGCA
LOC_Os12g20169
OsAffx.7647.1.S1_at--774--391Chr12:11750464..11750488 (25 bp)
ATCAGCCAAGCGCTAGCCCTTACTA
LOC_Os12g20169
OsAffx.7647.1.S1_at--842--4571Chr12:11750473..11750497 (25 bp)
GCGCTAGCCCTTACTACAGCAAATT
LOC_Os12g20169
OsAffx.7647.1.S1_at--800--4531Chr12:11750479..11750503 (25 bp)
GCCCTTACTACAGCAAATTTGGCTA
LOC_Os12g20169
OsAffx.7647.1.S1_at--643--9471Chr12:11750514..11750538 (25 bp)
TCTGATGGCCGCTGCAATCTACTTT
LOC_Os12g20169
OsAffx.7647.1.S1_at--1048--4211Chr12:11750522..11750546 (25 bp)
CCGCTGCAATCTACTTTTGGTCCAA
LOC_Os12g20169
Target Sequence 
GTCTGTTGCGCCGTCATCCAAGTACGCAGAGCATCTTACCAATCTTGTTGCGGTTCCCAGTTTGTCGCACGACCATCAGT
ACTTTCTCGGCCCAATTGGCAACCTTGACCCCTCTGAATTTATCATTGTTGAGACCAACAGAATCCCCTTTAGACTGGCC
AACCCAAACTTAAGTCACTGGAAAAACACCTTTAAATCATGGCCATCTATTGAGAAAAGTACCCCCGAGAAAAGCTGGCC
TTTGTGGTTCGAATGGGTATCGGCTAGCAAACAAGCCCACTGGGATGAAATCGGAATCAGCCAAGCGCTAGCCCTTACTA
CAGCAAATTTGGCTAAGGATGAGCCTCTGATGGCCGCTGCAATCTACTTTTGGTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis