Browse Element(s) Details


OsAffx.7781.1.S1_at

Description tigr:9640.m03262
TID=OsAffx.7781.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3377010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33700NANA12+20314838..20317749retrotransposon protein, putative, unclassified
LOC_Os12g33710OsAffx.32004.1.S1_at11/1112+20319356..20320162hypothetical protein
LOC_Os12g33720OsAffx.32005.1.S1_at11/1112+20320532..20321130hypothetical protein
LOC_Os12g33730OsAffx.30486.1.S1_at1/1112+20327049..20328454hypothetical protein
LOC_Os12g33740OsAffx.19950.1.S1_at11/1112+20329800..20330480Athila ORF 1, putative
LOC_Os12g33750Os.32823.1.S1_x_at2/1112+20336407..20336790hypothetical protein
LOC_Os12g33760OsAffx.7780.1.S1_x_at11/1112+20341321..20341560hypothetical protein
LOC_Os12g33770OsAffx.7781.1.S1_at10/1112+20342443..20343518hypothetical protein
LOC_Os12g33780OsAffx.32007.1.S1_at11/1112+20346345..20348699hypothetical protein
LOC_Os12g33790NANA12+20354629..20355279hypothetical protein
LOC_Os12g33800Os.24831.1.S1_x_at10/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.24831.3.S1_x_at7/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.53142.1.S1_at3/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.24831.3.S1_s_at1/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.24831.4.S1_x_at1/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33810NANA12+20360238..20362652retrotransposon protein, putative, unclassified
LOC_Os12g33820Os.40855.5.S1_x_at2/1112+20367061..20369732hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7781.1.S1_at--317--7031Chr12:20342482..20342506 (25 bp)
GGGCACGGGACTATCTTCGTTAGAT
LOC_Os12g33770
OsAffx.7781.1.S1_at--1160--791NONE
ATGGTAGTCATCTTCGTTAAACGGT
NONE
OsAffx.7781.1.S1_at--1014--671Chr12:20343127..20343151 (25 bp)
ATGACACCATCCTTGTAACAACCTG
LOC_Os12g33770
OsAffx.7781.1.S1_at--571--6011Chr12:20343180..20343204 (25 bp)
GAGAGTCGAGAGATGGCTCCCCACC
LOC_Os12g33770
OsAffx.7781.1.S1_at--266--3631Chr12:20343206..20343230 (25 bp)
CTTCGACAGCAGCACGGTGGTCCGT
LOC_Os12g33770
OsAffx.7781.1.S1_at--246--5891Chr12:20343287..20343311 (25 bp)
GAGCGAGCTCGCTGATGTGATCAAC
LOC_Os12g33770
OsAffx.7781.1.S1_at--160--4971Chr12:20343342..20343366 (25 bp)
GCATCTTCTCCGAATCCATGGGTAG
LOC_Os12g33770
OsAffx.7781.1.S1_at--271--4331Chr12:20343357..20343381 (25 bp)
CCATGGGTAGTGATTGGTACGGCAT
LOC_Os12g33770
OsAffx.7781.1.S1_at--554--6991Chr12:20343373..20343397 (25 bp)
GTACGGCATATGCATCCGTTGGCAA
LOC_Os12g33770
OsAffx.7781.1.S1_at--481--3771Chr12:20343388..20343412 (25 bp)
CCGTTGGCAAAGCTAATCGTTTCGA
LOC_Os12g33770
OsAffx.7781.1.S1_at--923--1591Chr12:20343428..20343452 (25 bp)
AGCTGTAATATATAACTCGATCGAG
LOC_Os12g33770
Target Sequence 
GGGCACGGGACTATCTTCGTTAGATTGAAGATGGTAGTCATCTTCGTTAAACGGTCTATATATGACACCATCCTTGTAAC
AACCTGGCCCGACGGCGAAGCAGAGGGCCGATGCGAGAGTCGAGAGATGGCTCCCCACCGCTTCGACAGCAGCACGGTGG
TCCGTGCCACGTCGCTCGCCGTCCGCAAGAAGCCGAGGATGTGCAGCAGCACGTCATCGGCGAGCGAGCTCGCTGATGTG
ATCAACGGCGGCGGAGCATCGTCGTCGTCATCTCGTGCATCTTCTCCGAATCCATGGGTAGTGATTGGTACGGCATATGC
ATCCGTTGGCAAAGCTAATCGTTTCGAATTCGAGAAGAAATTAGCTGTAATATATAACTCGATCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis