Browse Element(s) Details


OsAffx.7830.1.S1_at

Description tigr:9640.m03718
TID=OsAffx.7830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3825011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38210Os.6980.1.S1_at11/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38210OsAffx.8265.1.A1_at1/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38220NANA12+23449664..23449939hypothetical protein
LOC_Os12g38230Os.55662.1.S1_at11/1112+23451269..23452144expressed protein
LOC_Os12g38240NANA12+23456530..23457593transposon protein, putative, unclassified
LOC_Os12g38250OsAffx.7830.1.S1_at11/1112+23458352..23459049expressed protein
LOC_Os12g38260Os.53836.1.S1_at11/1112+23460907..23465702expressed protein
LOC_Os12g38270Os.9279.1.S1_at11/1112+23467876..23468826Metallothionein-like protein 1, putative, expressed
LOC_Os12g38280Os.27639.1.S1_x_at3/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38280Os.53731.1.S1_at2/1112+23470534..23477041retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g38290OsAffx.32080.1.S1_at11/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38290Os.17004.1.S1_at1/1112+23478959..23479866Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.1.S1_a_at11/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38300Os.37783.2.S1_x_at3/1112+23481533..23482492Metallothionein-like protein 1, putative, expressed
LOC_Os12g38310Os.2313.1.S1_at10/1112+23483112..23484957Mitochondrial import inner membrane translocase subunit Tim9, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7830.1.S1_at--975--6171Chr12:23458598..23458622 (25 bp)
GAGGAGCGGCTCACGCTACGAGCTC
LOC_Os12g38250
OsAffx.7830.1.S1_at--691--3351Chr12:23458609..23458633 (25 bp)
CACGCTACGAGCTCGTGAGCACGGA
LOC_Os12g38250
OsAffx.7830.1.S1_at--383--8651Chr12:23458659..23458683 (25 bp)
TGGGAATCGAATCCTGGACCTGCCT
LOC_Os12g38250
OsAffx.7830.1.S1_at--57--8111Chr12:23458674..23458698 (25 bp)
GGACCTGCCTCGGAAGCAGCGCTGT
LOC_Os12g38250
OsAffx.7830.1.S1_at--877--1651Chr12:23458691..23458715 (25 bp)
AGCGCTGTTCCTCGTGGCACGTGAA
LOC_Os12g38250
OsAffx.7830.1.S1_at--965--1191Chr12:23458740..23458764 (25 bp)
AGTTCGCCGGAATCCATCTTCGCCT
LOC_Os12g38250
OsAffx.7830.1.S1_at--490--3831Chr12:23458773..23458797 (25 bp)
CTGCGGGTGAGCAGGCCTGAATTCT
LOC_Os12g38250
OsAffx.7830.1.S1_at--789--3151Chr12:23458792..23458816 (25 bp)
AATTCTGGCGCTGGCCCGCGAAGAA
LOC_Os12g38250
OsAffx.7830.1.S1_at--997--1311Chr12:23458909..23458933 (25 bp)
AGATGGAGGATCACCCGTTCAGCTT
LOC_Os12g38250
OsAffx.7830.1.S1_at--625--4031Chr12:23458924..23458948 (25 bp)
CGTTCAGCTTCGGTCGCCATGGGAG
LOC_Os12g38250
OsAffx.7830.1.S1_at--412--9131Chr12:23458990..23459014 (25 bp)
TGCTGTCTTCTTCATAGCCGGCGGC
LOC_Os12g38250
Target Sequence 
GAGGAGCGGCTCACGCTACGAGCTCGTGAGCACGGAGGAGCCCGACGGCGACGAGACGAGCTGGGAATCGAATCCTGGAC
CTGCCTCGGAAGCAGCGCTGTTCCTCGTGGCACGTGAAGAGGATCCGAAGACGACGACGACGAGTTCGCCGGAATCCATC
TTCGCCTGCGACGAGCTGCGGGTGAGCAGGCCTGAATTCTGGCGCTGGCCCGCGAAGAAGGGCAGCGGCGGCGACGGCGA
GCCGGCGGCCGCGGTGGAGTCCGAGCCGTTCCTGACGCGCCGCCGCGGGGCGAAGCGGGTGAACGATGCGGAGATGGAGG
ATCACCCGTTCAGCTTCGGTCGCCATGGGAGGATGGAGTCGTCGTCGTCGGCGGCGGCGGCGGCGTTGTTGCTGCTGTCT
TCTTCATAGCCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis