Browse Element(s) Details


OsAffx.8958.1.S1_at

Description gb:NM_193602.1
DB_XREF= gi:34914287
GEN=B1151A10.10
TID=OsAffx.8958.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1151A10.10 (B1151A10.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3919011/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39134Os.40808.1.S1_x_at11/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39134Os.16183.1.S1_at10/111+22348696..22354116EF hand family protein, expressed
LOC_Os01g39150OsAffx.23574.1.S1_x_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39150OsAffx.23574.1.S1_at11/111+22363677..22364432hypothetical protein
LOC_Os01g39160OsAffx.23575.1.S1_x_at11/111+22366437..22366952expressed protein
LOC_Os01g39170OsAffx.676.2.A1_at11/111+22367478..22368073hypothetical protein
LOC_Os01g39180OsAffx.23577.1.S1_s_at11/111+22369777..22372161hypothetical protein
LOC_Os01g39180Os.29932.2.S1_at1/111+22369777..22372161hypothetical protein
LOC_Os01g39190OsAffx.8958.1.S1_at11/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.8473.1.S1_x_at3/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.2.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.23574.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.25367.1.S1_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190Os.47999.3.A1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39190OsAffx.675.1.S1_x_at1/111+22372952..22378585retrotransposon, putative, centromere-specific
LOC_Os01g39200NANA1+22380476..22385348retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g39210NANA1+22387929..22388258hypothetical protein
LOC_Os01g39220OsAffx.23571.1.S1_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39220OsAffx.23571.1.S1_x_at11/111+22391168..22391587LOB domain protein 22, putative
LOC_Os01g39230NANA1+22394645..22395088hypothetical protein
LOC_Os01g39250Os.12205.1.S1_at11/111+22401234..22406708ATP-dependent metalloprotease FtsH family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8958.1.S1_at--463--4331Chr01:22375885..22375909 (25 bp)
CCATCCACTAGGAGGCCACTATTGC
LOC_Os01g39190
OsAffx.8958.1.S1_at--358--10092Chr01:22375893..22375917 (25 bp)
TAGGAGGCCACTATTGCCGCGCTCG
LOC_Os01g39190
OsAffx.8958.1.S1_at--506--5111Chr01:22375917..22375941 (25 bp)
GCACAACGTGCCTGGCCGGACTATT
LOC_Os01g39190
OsAffx.8958.1.S1_at--160--4491Chr01:22375931..22375955 (25 bp)
GCCGGACTATTTGGCCTCAATGACA
LOC_Os01g39190
OsAffx.8958.1.S1_at--486--2731Chr01:22376063..22376087 (25 bp)
AAGCAACACATACCAGCATACCACG
LOC_Os01g39190
OsAffx.8958.1.S1_at--1135--512Chr01:22376135..22376159 (25 bp)
ATCGACGTCTACGAGGCGGACGCAG
LOC_Os01g39190
OsAffx.8958.1.S1_at--371--9971Chr01:22376234..22376258 (25 bp)
TACCTTGATGATCCGCCTATCATAG
LOC_Os01g39190
OsAffx.8958.1.S1_at--341--4311Chr01:22376249..22376273 (25 bp)
CCTATCATAGATGCTGCGGCGACAT
LOC_Os01g39190
OsAffx.8958.1.S1_at--219--9371Chr01:22376340..22376364 (25 bp)
TCGACTCGTCGATTAGCTTCCGCGA
LOC_Os01g39190
OsAffx.8958.1.S1_at--1027--9991Chr01:22376353..22376377 (25 bp)
TAGCTTCCGCGATAGAAGAGATTGT
LOC_Os01g39190
OsAffx.8958.1.S1_at--151--5372Chr01:22376367..22376391 (25 bp)
GAAGAGATTGTCATGACCGTCACAA
LOC_Os01g39190
Target Sequence 
CCATCCACTAGGAGGCCACTATTGCCGCGCTCGCACAACGTGCCTGGCCGGACTATTTGGCCTCAATGACATCGACCACG
GTGGACGACAAGTTTGGGCCGACACCCGATATGGCATCGCCGGTGGGGAGCACGAGCGTGTGCACGCCGAGACCTTCGCG
CTGGTGCCACAGCCGCACAAGCAACACATACCAGCATACCACGCGACCCACTTCGACAACAACGATCTCCTCTTGGGCAC
CCACGCGGCCATCGACGTCTACGAGGCGGACGCAGCAGCAGCTGTTGTTTCTGCCGCCGCCGCCGATGCTACAAGATGGC
CACTAGACGATGAGATGGTTGAAGATGATTACCTTGATGATCCGCCTATCATAGATGCTGCGGCGACATCGACGGCGCCG
GAACGCCATGGGGATGGACGTGCGCCTCCTGCCGACGTCAAGGGAGAAGGCGACGTCGACTCGTCGATTAGCTTCCGCGA
TAGAAGAGATTGTCATGACCGTCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis