Browse Element(s) Details


OsAffx.9156.2.S1_at

Description tigr:9629.m04012
TID=OsAffx.9156.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4191011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41890Os.33928.1.S1_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.4.A1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890Os.33928.1.S1_x_at11/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41890OsAffx.24510.1.S1_x_at1/111+24073688..24078561NB-ARC domain containing protein, expressed
LOC_Os01g41900Os.15138.1.S1_at11/111+24087195..24089348MCB2 protein, putative, expressed
LOC_Os01g41910OsAffx.9156.2.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41910OsAffx.9156.1.S1_s_at11/111+24096963..24098363Leucine Rich Repeat family protein, expressed
LOC_Os01g41920NANA1+24099163..24099531hypothetical protein
LOC_Os01g41930Os.9136.2.A1_at10/111+24103314..24106595Leucine Rich Repeat family protein, expressed
LOC_Os01g41939NANA1+24108196..24109223NA
LOC_Os01g41950Os.30203.1.S1_at11/111+24109678..24112621expressed protein
LOC_Os01g41960OsAffx.797.1.S1_at11/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_s_at9/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.1.S1_at6/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_at3/111+24114808..24123820retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9156.2.S1_at--55--131Chr01:24097566..24097779 (25 bp)
ATTCAAGGAGGAGATATCCCAGAGG
LOC_Os01g41910
OsAffx.9156.2.S1_at--319--3091Chr01:24097781..24097805 (25 bp)
AATAACATCTCTTGTTGGACTGAAG
LOC_Os01g41910
OsAffx.9156.2.S1_at--143--10731Chr01:24097809..24097833 (25 bp)
TTGAACTTCTCCCATAACCATTTAA
LOC_Os01g41910
OsAffx.9156.2.S1_at--411--91Chr01:24097842..24097866 (25 bp)
ATTCCAGAGAAGATTGGTCTCCTGA
LOC_Os01g41910
OsAffx.9156.2.S1_at--232--6051Chr01:24097865..24097889 (25 bp)
GAGATATGTGGAGTCTCTTGACCTA
LOC_Os01g41910
OsAffx.9156.2.S1_at--420--6491Chr01:24097901..24097925 (25 bp)
GATATCAGGCGAAATCCCTTCAAGT
LOC_Os01g41910
OsAffx.9156.2.S1_at--1154--5571Chr01:24097911..24097935 (25 bp)
GAAATCCCTTCAAGTCTCTCAGACA
LOC_Os01g41910
OsAffx.9156.2.S1_at--489--2851Chr01:24097922..24097946 (25 bp)
AAGTCTCTCAGACATGGCTTCACTG
LOC_Os01g41910
OsAffx.9156.2.S1_at--869--9671Chr01:24097941..24097965 (25 bp)
TCACTGAGCTACTTGAACCTGTCAT
LOC_Os01g41910
OsAffx.9156.2.S1_at--615--3871Chr01:24097959..24097983 (25 bp)
CTGTCATTCAACAATTTGTCCGGAA
LOC_Os01g41910
OsAffx.9156.2.S1_at--1149--6711Chr01:24098080..24098263 (25 bp)
GTTCTGGACCGGAGGACAGCATACA
LOC_Os01g41910
Target Sequence 
ATTCAAGGAGGAGATATCCCAGAGGAAATAACATCTCTTGTTGGACTGAAGAACTTGAACTTCTCCCATAACCATTTAAC
AGGAAATATTCCAGAGAAGATTGGTCTCCTGAGATATGTGGAGTCTCTTGACCTATCATTCAACATGATATCAGGCGAAA
TCCCTTCAAGTCTCTCAGACATGGCTTCACTGAGCTACTTGAACCTGTCATTCAACAATTTGTCCGGAAGAATACCATCA
GGGAATCAGCTACAGACACTTGGTGATCCAGATTTCATATACATCGGCAATTACTATCTCTGTGGACCTCCTCTTTCAAG
GAATTGTTCTGGACCGGAGGACAGCATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9156.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis