Browse Element(s) Details


OsAffx.9441.1.S1_at

Description gb:NM_191212.1
DB_XREF= gi:34909507
GEN=P0481E12.24
TID=OsAffx.9441.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0481E12.24 (P0481E12.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5449011/11Phosphatidylethanolamine-binding protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54430Os.34474.2.S1_at2/111+31645119..31645936Plastocyanin-like domain containing protein
LOC_Os01g54440OsAffx.21624.1.S1_s_at11/111+31647011..31648696expressed protein
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54460NANA1+31654170..31655105hypothetical protein
LOC_Os01g54470OsAffx.11605.1.S1_at11/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.28229.2.S1_x_at2/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.51561.1.S1_x_at1/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed
LOC_Os01g54520Os.16803.3.S1_x_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.1.S1_at11/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_x_at10/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54520Os.16803.2.S1_at9/111+31686047..31688857lipoprotein, putative, expressed
LOC_Os01g54530Os.2150.1.S1_at11/111+31689519..31692374expressed protein
LOC_Os01g54540Os.11152.1.S1_at11/111+31693883..3169626050S ribosomal protein L13, chloroplast precursor, putative, expressed
LOC_Os01g54550Os.2152.1.S1_at11/111+31697076..31699577heat shock factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9441.1.S1_at--27--4751Chr01:31670335..31670359 (25 bp)
GCTGAGCTGAAACCATCTGCAACTG
LOC_Os01g54490
OsAffx.9441.1.S1_at--999--1771Chr01:31670389..31670413 (25 bp)
ACCGACCTGAGGGTGTTCTACACAT
LOC_Os01g54490
OsAffx.9441.1.S1_at--874--111Chr01:31670644..31670668 (25 bp)
ATAGACACCCCGAGGTCATGGTTGT
LOC_Os01g54490
OsAffx.9441.1.S1_at--274--10831Chr01:31670665..31670689 (25 bp)
TTGTGGACATCTTCTGGGTGGGACA
LOC_Os01g54490
OsAffx.9441.1.S1_at--404--1351Chr01:31670689..31670713 (25 bp)
AGAGTTCCTGTGATGCAACGTCCCA
LOC_Os01g54490
OsAffx.9441.1.S1_at--973--2571Chr01:31672135..31672156 (22 bp)
AACGTCAAGACCTCATGCTTTATGA
LOC_Os01g54490
OsAffx.9441.1.S1_at--1114--7611Chr01:31672220..31672244 (25 bp)
GGGAACCGTTTTTGCACCAGAGATG
LOC_Os01g54490
OsAffx.9441.1.S1_at--896--6031Chr01:31672239..31672263 (25 bp)
GAGATGCGACACAACTTCCATTGTA
LOC_Os01g54490
OsAffx.9441.1.S1_at--1012--5391Chr01:31672264..31672288 (25 bp)
GAAGCTTTGCGCAACAATACCATCT
LOC_Os01g54490
OsAffx.9441.1.S1_at--472--311Chr01:31672280..31672304 (25 bp)
ATACCATCTGGACATTGTGGCCGCT
LOC_Os01g54490
OsAffx.9441.1.S1_at--868--8651Chr01:31672295..31672319 (25 bp)
TGTGGCCGCTACATATTTCAACTGC
LOC_Os01g54490
Target Sequence 
GCTGAGCTGAAACCATCTGCAACTGTGCATAAACCAAGAGTAGATATTGGTGGCACCGACCTGAGGGTGTTCTACACATT
GGTACTGGTGGATCCAGATGCTCCAAGCCCAAGCAACCCATCACTAGGGGAGTATTTGCACTATCTCAGTGGGATACATA
GACACCCCGAGGTCATGGTTGTGGACATCTTCTGGGTGGGACAGAGTTCCTGTGATGCAACGTCCCACCTGACGTGGTCA
CTGACATGTGGACCCGTAGGTGGTGGGGATCACATGATGGTGATAGATATCCCAGGAACAACTGGAGTCAACTTTATCCC
CAAAAACAACATAAAAGATGCAGCCATTAATGAGCCTAAACGTCAAGACCTCATGCTTTATGAAAGACCGGAACTGAGAT
ATGGTATCCACCGGATGGTATTTGTGTTATTCCGACAACTTGGCAGGGGAACCGTTTTTGCACCAGAGATGCGACACAAC
TTCCATTGTAGAAGCTTTGCGCAACAATACCATCTGGACATTGTGGCCGCTACATATTTCAACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis