Browse Element(s) Details


OsAffx.9724.1.S1_at

Description gb:NM_189510.1
DB_XREF= gi:34906103
GEN=P0020E09.12
TID=OsAffx.9724.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative senescence-assocated protein (P0020E09.12), mRNA.
PROD=putative senescence-assocated protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7457011/11Tetraspanin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9724.1.S1_at--1128--7951Chr01:43512496..43512520 (25 bp)
GGATCACCGTCTTCGGGCTGGCCGT
LOC_Os01g74570
OsAffx.9724.1.S1_at--135--3351Chr01:43512606..43512630 (25 bp)
CACGTGCGGGCGGAGCGGTACTGGA
LOC_Os01g74570
OsAffx.9724.1.S1_at--121--1831Chr01:43512717..43512741 (25 bp)
ACGCCCGTGCAGTCCGGTTGCTGCA
LOC_Os01g74570
OsAffx.9724.1.S1_at--796--1791Chr01:43512750..43512774 (25 bp)
ACCGCGTGCACCTACTATGACGATG
LOC_Os01g74570
OsAffx.9724.1.S1_at--576--3371Chr01:43512758..43512782 (25 bp)
CACCTACTATGACGATGCCCAGCAG
LOC_Os01g74570
OsAffx.9724.1.S1_at--328--8071Chr01:43512869..43512893 (25 bp)
GGAGCAGCTGCGTCGCCACTGGCAC
LOC_Os01g74570
OsAffx.9724.1.S1_at--801--1591Chr01:43512874..43512898 (25 bp)
AGCTGCGTCGCCACTGGCACAACGT
LOC_Os01g74570
OsAffx.9724.1.S1_at--329--4911Chr01:43512951..43512975 (25 bp)
GCTTGCTGCGCCTTCCGTAACACTG
LOC_Os01g74570
OsAffx.9724.1.S1_at--995--10671Chr01:43513002..43513026 (25 bp)
TTCCATCTCCATCCGCGCTGGGAGT
LOC_Os01g74570
OsAffx.9724.1.S1_at--419--551Chr01:43513012..43513036 (25 bp)
ATCCGCGCTGGGAGTACCGCTGGTA
LOC_Os01g74570
OsAffx.9724.1.S1_at--277--6991Chr01:43513025..43513049 (25 bp)
GTACCGCTGGTATCTACTTTATCTT
LOC_Os01g74570
Target Sequence 
GGATCACCGTCTTCGGGCTGGCCGTCACCGCGGGAGGGGGCGGCACGCAGGTGGCCGGCAGGCCCTACCGTGAGTTCCGC
CTCGCCGACTACTCGTCGTGGCTGCAGCGCCACGTGCGGGCGGAGCGGTACTGGAGGCCGGCGCTGGCCTGCGTGCTGGC
TGCCAGGGCCTGCGACACCCTCGCCGCCTGGACGCCCCTCGACTACCTCCGCAATGACCTCACGCCCGTGCAGTCCGGTT
GCTGCAAGCCGCCCACCGCGTGCACCTACTATGACGATGCCCAGCAGCAGCAGCAGCAGCCCGACTGCTACCGGTGGAGC
AACGCCCCCGGCGTGCTGTGCTACGGGTGCGACTCGTGCAAGGCCGGCGTGCTGGAGCAGCTGCGTCGCCACTGGCACAA
CGTCACCATCCTCAACGTCGTCCTCCTCCTGCTTCTCATCCTCTTCTACTCCTGCGCTTGCTGCGCCTTCCGTAACACTG
CCACTGCCACATCCTCCAAGACGATCTTCCATCTCCATCCGCGCTGGGAGTACCGCTGGTATCTACTTTATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis