Browse Element(s) Details


OsAffx.9740.1.S1_s_at

Description gb:NM_189379.1
DB_XREF= gi:34905841
GEN=P0483G10.25
TID=OsAffx.9740.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0483G10.25 (P0483G10.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7324011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73170Os.15894.1.A2_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73170Os.15894.1.A1_a_at11/111+42756350..42759466Peroxidase 12 precursor, putative, expressed
LOC_Os01g73180OsAffx.21933.1.S1_at9/111+42760749..42761018hypothetical protein
LOC_Os01g73190OsAffx.9742.1.S1_s_at11/111+42763437..42764668Peroxidase 12 precursor, putative, expressed
LOC_Os01g73200Os.16558.1.S1_at11/111+42768508..42769803Peroxidase 12 precursor, putative, expressed
LOC_Os01g73210OsAffx.24025.1.S1_at11/111+42770465..42770791hypothetical protein
LOC_Os01g73220OsAffx.21931.1.S1_at11/111+42772849..42774307Peroxidase 12 precursor, putative, expressed
LOC_Os01g73230Os.7689.1.S1_a_at11/111+42774773..42777771SNELIPTRC, putative, expressed
LOC_Os01g73240OsAffx.9740.1.S1_at11/111+42783687..42784325expressed protein
LOC_Os01g73240OsAffx.9740.1.S1_s_at11/111+42783687..42784325expressed protein
LOC_Os01g73250OsAffx.11838.1.S1_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250Os.22580.1.S1_s_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73250OsAffx.11838.1.S1_x_at11/111+42787403..42789124ABA/WDS induced protein, expressed
LOC_Os01g73260OsAffx.24026.1.S1_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73260OsAffx.24026.1.S1_x_at11/111+42793915..42795130hypothetical protein
LOC_Os01g73270Os.31324.1.S1_at3/111+42797175..42798698expressed protein
LOC_Os01g73280NANA1+42799457..42800918hypothetical protein
LOC_Os01g73290OsAffx.13272.1.S1_at1/111+42801517..42802219hypothetical protein
LOC_Os01g73300Os.53619.1.S1_at11/111+42806540..42810187VAMP-like protein YKT62, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9740.1.S1_s_at--1046--3031Chr01:42783891..42783915 (25 bp)
AATCGGACGCCATCCGTGGTGGAGA
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--258--9051Chr01:42783922..42783946 (25 bp)
TGCAGGTGCCGGAGATCGTCGAACA
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--615--6391Chr01:42783935..42783959 (25 bp)
GATCGTCGAACAGAACGTCGTTGAA
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--1160--10731Chr01:42783955..42783979 (25 bp)
TTGAAAGAGATGAGCGGCTGCGCAC
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--556--9151Chr01:42783973..42783997 (25 bp)
TGCGCACCAGCGATGACAACGACGA
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--9--1851Chr01:42783994..42784018 (25 bp)
ACGACTACGAAGACGAACCCATAGT
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--1011--2091Chr01:42784069..42784093 (25 bp)
ACATCGGCGGGTACCACGGCAGCAA
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--58--3271Chr01:42784169..42784193 (25 bp)
CAAACCGACCACCACCAGAAAGGTG
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--108--2811Chr01:42784194..42784218 (25 bp)
AAGATCGTCCACAGGATGATCCGGC
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--988--551Chr01:42784212..42784236 (25 bp)
ATCCGGCCGCCGAACCAGTATGGCG
LOC_Os01g73240
OsAffx.9740.1.S1_s_at--1132--1691Chr01:42784256..42784280 (25 bp)
ACCAACAGCAGGAGGAGGCCACCAG
LOC_Os01g73240
Target Sequence 
AATCGGACGCCATCCGTGGTGGAGACGAAGGTGCAGGTGCCGGAGATCGTCGAACAGAACGTCGTTGAAAGAGATGAGCG
GCTGCGCACCAGCGATGACAACGACGACTACGAAGACGAACCCATAGTGAGGAGAGACGGGCACGGCGGCGGCGGCGGCG
GCAGGAGGGCGTACGGCGACATCGGCGGGTACCACGGCAGCAAGGGCAGGTGGCCGCGCGAGCCCGAAGTGGAGAAGCTC
GAGAGGGAGAAGGAGATGCTAAAGTATGGCATTATGTCCAAACCGACCACCACCAGAAAGGTGAAGATCGTCCACAGGAT
GATCCGGCCGCCGAACCAGTATGGCGCCGCCGGCAGTGCACCACCACCAACAGCAGGAGGAGGCCACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9740.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis