Browse Element(s) Details


OsAffx.9772.1.S1_at

Description gb:NM_189231.1
DB_XREF= gi:34905545
GEN=OJ1123_G09.5
TID=OsAffx.9772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1123_G09.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2929011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g204303/11transposon protein, putative, unclassified
LOC_Os03g425303/11retrotransposon protein, putative, unclassified
LOC_Os06g319901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g322201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g152401/11expressed protein
LOC_Os02g239701/11Transposable element protein, putative, Retrotrans_gag
LOC_Os06g259901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29240Os.34410.1.S1_at11/111+16719170..16720248expressed protein
LOC_Os01g29250NANA1+16721546..16724631retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g29260Os.25754.2.S1_x_at3/111+16727495..16730459retrotransposon protein, putative, unclassified
LOC_Os01g29270OsAffx.20387.1.S1_x_at2/111+16734636..16740234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29280Os.37062.1.S1_at11/111+16741909..16742875expressed protein
LOC_Os01g29280Os.37062.2.S1_x_at8/111+16741909..16742875expressed protein
LOC_Os01g29290OsAffx.9772.1.S1_at11/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_at3/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.12169.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.13774.1.S1_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29300OsAffx.23445.1.S1_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29300OsAffx.23445.1.S1_x_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29310NANA1+16751209..16752267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29320OsAffx.3903.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30891.1.S1_x_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30350.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29330Os.23606.1.S1_at11/111+16762724..16763708expressed protein
LOC_Os01g29340NANA1+16764361..16768996retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9772.1.S1_at--405--2291Chr01:16745441..16745465 (25 bp)
AAATGGCCAGCCAGAGATGGAGAGA
LOC_Os01g29290
OsAffx.9772.1.S1_at--255--9614Chr11:11019590..11019663 (25 bp)
TCATCTGACTTCTACCTCGGTACAC
NONE
OsAffx.9772.1.S1_at--943--88313Chr08:10660573..10660597 (25 bp)
TGCTCCGGGTTCAGAGAACTTCTTC
NONE
OsAffx.9772.1.S1_at--61--54952Chr12:6777284..6777406 (25 bp)
GAACTTCTTCTATAAATGCTCTAGT
NONE
OsAffx.9772.1.S1_at--220--28718Chr10:4564667..4564691 (25 bp)
AAGGAAGTTCCTGTACAAGTATTAG
NONE
OsAffx.9772.1.S1_at--260--7751Chr01:16745740..16745764 (25 bp)
GGTGTCTAGGTTAGAGGTGACCTTT
LOC_Os01g29290
OsAffx.9772.1.S1_at--79--71118Chr12:16150917..16150936 (20 bp)
GTCAGAGGTGAAGTGCTACAACGGT
NONE
OsAffx.9772.1.S1_at--183--90711Chr11:12622089..12622109 (21 bp)
TGCTACAACGGTATTCCGTGCTGTT
NONE
OsAffx.9772.1.S1_at--756--6851Chr01:16746092..16746116 (25 bp)
GTATTCCGTGCTGTTAACAACCAAA
LOC_Os01g29290
OsAffx.9772.1.S1_at--916--1851Chr01:16746150..16746174 (25 bp)
ACTGAGGCGGAAACCAAGATGGAAA
LOC_Os01g29290
OsAffx.9772.1.S1_at--513--9271Chr01:16746179..16746203 (25 bp)
TCCGGAATCAGAGCGAGGATCGTCT
LOC_Os01g29290
Target Sequence 
AAATGGCCAGCCAGAGATGGAGAGAATGGAGGGGAAGCTCTGGAGGAGTGCCCGGAAGTTTGGCGCTCATCTGACTTCTA
CCTCGGTACACTCTGCTCCGGGTTCAGAGAACTTCTTCTATAAATGCTCTAGTACTAGGACTCTGGATAAAGAAGGAAGT
TCCTGTACAAGTATTAGAGTAGTAATTAATAACTTAGACGTGGTGTCTAGGTTAGAGGTGACCTTTGTTTGTTGTGTATC
CCACGGATTTGTCAGAGGTGAAGTGCTACAACGGTATTCCGTGCTGTTAACAACCAAATTTGGTAATTTCAGTATCGGAG
ATGGAGATAAAACTGAGGCGGAAACCAAGATGGAAATCGTTCCGGAATCAGAGCGAGGATCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis