Browse Element(s) Details


OsAffx.9859.1.S1_at

Description tigr:9629.m01410
TID=OsAffx.9859.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1433011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14290OsAffx.22940.2.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.1.S1_s_at11/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_x_at10/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.3.S1_x_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.5.S1_at9/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.22940.2.S1_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.3.S1_x_at6/111+8003677..8006140hypothetical protein
LOC_Os01g14290Os.35344.18.S1_x_at5/111+8003677..8006140hypothetical protein
LOC_Os01g14290OsAffx.31552.2.S1_at1/111+8003677..8006140hypothetical protein
LOC_Os01g14300OsAffx.9860.1.S1_x_at2/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14300OsAffx.11047.1.S1_at1/111+8008839..8010609transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g14310OsAffx.22044.1.S1_at11/111+8013354..8015837hypothetical protein
LOC_Os01g14320OsAffx.23239.1.S1_x_at11/111+8020589..8021737hypothetical protein
LOC_Os01g14330OsAffx.9859.1.S1_at11/111+8027686..8028573hypothetical protein
LOC_Os01g14340OsAffx.23240.1.S1_x_at10/111+8029678..8031824hypothetical protein
LOC_Os01g14340OsAffx.23240.2.S1_at1/111+8029678..8031824hypothetical protein
LOC_Os01g14350OsAffx.23240.1.S1_x_at6/111+8034696..8036492hypothetical protein
LOC_Os01g14350OsAffx.23240.2.S1_at1/111+8034696..8036492hypothetical protein
LOC_Os01g14360NANA1+8037758..8038012hypothetical protein
LOC_Os01g14370Os.15122.2.S1_x_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_a_at11/111+8044185..8052384TAZ zinc finger family protein, expressed
LOC_Os01g14370Os.15122.1.S1_at11/111+8044185..8052384TAZ zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9859.1.S1_at--192--731Chr01:8027903..8027927 (25 bp)
ATGATTTCTATAACCCCATCGTCTC
LOC_Os01g14330
OsAffx.9859.1.S1_at--136--9691Chr01:8027978..8028002 (25 bp)
TCACGGACCCTTCCTACTTCGTGTG
LOC_Os01g14330
OsAffx.9859.1.S1_at--1079--4471Chr01:8028022..8028046 (25 bp)
GCCGAGGGCAGGACCTTCACTTACG
LOC_Os01g14330
OsAffx.9859.1.S1_at--890--2111Chr01:8028203..8028227 (25 bp)
ACATGGTAGACGTGGCCTGCCGCGT
LOC_Os01g14330
OsAffx.9859.1.S1_at--994--3931Chr01:8028236..8028260 (25 bp)
CGGAAGCCAGGGACGCCAAAGAGCA
LOC_Os01g14330
OsAffx.9859.1.S1_at--582--7311Chr01:8028283..8028307 (25 bp)
GTGCTGACCAAGAAGACGACCCCGA
LOC_Os01g14330
OsAffx.9859.1.S1_at--397--1871Chr01:8028298..8028322 (25 bp)
ACGACCCCGAAGAACAGCGCAGCAA
LOC_Os01g14330
OsAffx.9859.1.S1_at--529--5491Chr01:8028309..8028333 (25 bp)
GAACAGCGCAGCAAACAGGAGCAGC
LOC_Os01g14330
OsAffx.9859.1.S1_at--923--971Chr01:8028325..8028349 (25 bp)
AGGAGCAGCGACAAGCCTCTCAAGA
LOC_Os01g14330
OsAffx.9859.1.S1_at--407--1671Chr01:8028338..8028362 (25 bp)
AGCCTCTCAAGATCAATTCAATACA
LOC_Os01g14330
OsAffx.9859.1.S1_at--522--131Chr01:8028353..8028377 (25 bp)
ATTCAATACAGAAGCCGGCGCTGGC
LOC_Os01g14330
Target Sequence 
ATGATTTCTATAACCCCATCGTCTCATGCTCCTGCTGCGGCGTCGAGCCCGTCGCCGCCGCCCACCTCGCCTGCCTCACG
GACCCTTCCTACTTCGTGTGCCCAGCGTGCGCCGCCGCCGCCGAGGGCAGGACCTTCACTTACGCCCCCTCGAGCGGTGC
CCCGCACGCGCTGGCGGAGCGCGTGCTCCTCGTCGCGGCGCGGCTCGCGCACGAGTCCGTCGCCCGTGCCGCGGCGGCGG
CGCGCGAGCAGGCGGAGCGCCTGATCCGGGAGGCGGCCGCCGCCAGGAAGCGCGCGCGCGACATGGTAGACGTGGCCTGC
CGCGTCCTGGAGGCGGAAGCCAGGGACGCCAAAGAGCAGGCCGCGGCGCCCCCCTCACCCGTGCTGACCAAGAAGACGAC
CCCGAAGAACAGCGCAGCAAACAGGAGCAGCGACAAGCCTCTCAAGATCAATTCAATACAGAAGCCGGCGCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis