Browse Element(s) Details


OsAffx.988.1.S1_at

Description gb:NM_191022.1
DB_XREF= gi:34909127
GEN=P0468B07.7
TID=OsAffx.988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0468B07.7 (P0468B07.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g434642/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g264401/11expressed protein
LOC_Os10g188001/11hypothetical protein
LOC_Os05g151601/11Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os04g104341/11Amidase family protein, expressed
LOC_Os03g644001/11expressed protein
LOC_Os06g408181/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g211101/11hypothetical protein
LOC_Os11g254001/11retrotransposon protein, putative, unclassified
LOC_Os04g575101/11Exostosin family protein, expressed
LOC_Os06g468601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43420Os.12126.2.S1_at11/114+25481930..25484231peptidoglycan-binding domain-containing protein, putative, expressed
LOC_Os04g43430Os.25530.1.S1_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43430Os.25530.1.S2_at11/114+25483280..25488332pentatricopeptide, putative, expressed
LOC_Os04g43440OsAffx.26443.1.S1_s_at11/114+25489213..25493439NB-ARC domain containing protein, expressed
LOC_Os04g43450OsAffx.4075.1.S1_at11/114+25494457..25495836hypothetical protein
LOC_Os04g43464OsAffx.22722.1.S1_at6/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.988.1.S1_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43464OsAffx.22722.1.S1_x_at2/114+25496762..25503084retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43480OsAffx.20628.2.S1_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.2.S1_x_at3/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.20628.1.S1_at2/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.10496.1.S1_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43480OsAffx.2442.1.S1_x_at1/114+25503987..25506917retrotransposon protein, putative, unclassified
LOC_Os04g43490Os.8244.1.S1_at11/114+25508412..25512689Casein kinase I, epsilon isoform, putative, expressed
LOC_Os04g43500Os.14919.1.S1_at5/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500Os.56216.1.S1_at2/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43500OsAffx.29313.1.S1_at1/114+25518373..25523994SWIM zinc finger family protein
LOC_Os04g43519OsAffx.4076.1.S1_at11/114+25525839..25529741hypothetical protein
LOC_Os04g43519OsAffx.26444.1.S1_at11/114+25525839..25529741hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006952biological_processdefense response
GO:0009416biological_processresponse to light stimulus
GO:0009718biological_processanthocyanin biosynthesis
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0015995biological_processchlorophyll biosynthesis
GO:0005634cellular_componentnucleus
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003824molecular_functioncatalytic activity
GO:0004040molecular_functionamidase activity
GO:0004194molecular_functionpepsin A activity
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.988.1.S1_at--713--8731NONE
TGTAGTTTGGTGTAAAGTCCATCAC
NONE
OsAffx.988.1.S1_at--93--2392Chr12:4778735..4778952 (25 bp)
AAACTTGAACCGTTGTATCATCCCG
NONE
OsAffx.988.1.S1_at--696--95978Chr12:23415968..23415989 (22 bp)
TCATCTGGGTCAAATAGGACGGGAC
NONE
OsAffx.988.1.S1_at--641--9510Chr12:23942279..23942690 (25 bp)
AGGACGGGACCGGAGTGACACAACT
NONE
OsAffx.988.1.S1_at--83--8118Chr12:23942672..23942696 (25 bp)
GGACCGGAGTGACACAACTGAACAA
NONE
OsAffx.988.1.S1_at--816--6311Chr01:34687956..34688084 (25 bp)
GATGACACAGTCAAACAAACAGGAG
NONE
OsAffx.988.1.S1_at--1148--3271NONE
CAAACAGGAGAGTTGTGTACCATCT
NONE
OsAffx.988.1.S1_at--529--6631Chr01:34687930..34687954 (25 bp)
GTTGTGTACCATCTATACTCGTTTA
NONE
OsAffx.988.1.S1_at--226--9912Chr03:21125736..21125791 (25 bp)
TACTCGTTTAAAAGGCTCTGGTGGT
NONE
OsAffx.988.1.S1_at--825--8571Chr01:34687894..34687918 (25 bp)
TGGTAGTGGCCGTGAATCTACACCA
NONE
OsAffx.988.1.S1_at--43--8471Chr01:34687888..34687912 (25 bp)
TGGCCGTGAATCTACACCACCAATG
NONE
Target Sequence 
TGTAGTTTGGTGTAAAGTCCATCACCGGTCCCTAAACTTGAACCGTTGTATCATCCCGGTCCCTAAACTCGCAAATCGAC
CGTTCAGGTCCTTAAACTTGTTCGACTGTGTCATCCCGGCCCCTAAACTTGCAGATCACTCGTTTAGGTCCTCCAACTTG
TTCAGTTGTGTCACCCCGGTTCCTAAACTTGGATTTGAATATCATCTGGGTCAAATAGGACGGGACCGGAGTGACACAAC
TGAACAAGTTGGAGGACCTAAACGAGTGATCTACAAGTTTAGGGACCGAGATGACACAGTCAAACAAACAGGAGAGTTGT
GTACCATCTATACTCGTTTAAAAGGCTCTGGTGGTAGTGGCCGTGAATCTACACCACCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis