Browse Element(s) Details


OsAffx.9905.1.S1_at

Description gb:NM_188523.1
DB_XREF= gi:34904129
TID=OsAffx.9905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g123403/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12290OsAffx.22097.1.S1_at11/111+6708617..6710944D-mannose binding lectin family protein
LOC_Os01g12300OsAffx.22097.2.S1_x_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12300OsAffx.22097.3.S1_at11/111+6711843..6716672Protein kinase domain containing protein, expressed
LOC_Os01g12310NANA1+6719007..6719402Histone deacetylase RPD3, putative
LOC_Os01g12320Os.3754.1.S1_at11/111+6721743..6725340GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g12330Os.31624.1.S1_at11/111+6728954..6732284expressed protein
LOC_Os01g12330Os.31624.2.S1_x_at11/111+6728954..6732284expressed protein
LOC_Os01g12340OsAffx.9045.1.S1_x_at4/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9905.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12340OsAffx.9045.1.S1_at3/111+6732560..6743100retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.2.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12350Os.31312.5.S1_x_at2/111+6744278..6747530retrotransposon protein, putative, unclassified
LOC_Os01g12360OsAffx.22492.1.S1_x_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12360OsAffx.22492.1.S1_at1/111+6748159..6754314retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12374OsAffx.22233.2.S1_x_at7/111+6755777..6760669expressed protein
LOC_Os01g12374OsAffx.22233.5.S1_x_at3/111+6755777..6760669expressed protein
LOC_Os01g12390Os.28972.1.S1_at11/111+6763301..6766915leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9905.1.S1_at--946--1931NONE
ACGGCTGCACGGTACCCAATCGGGT
NONE
OsAffx.9905.1.S1_at--762--3171Chr01:6732780..6733017 (25 bp)
CAATCGGGTTCAGGGAGGACGTTCT
LOC_Os01g12340
OsAffx.9905.1.S1_at--1063--2511Chr01:6732724..6732748 (25 bp)
AACTTCAACGAGAGCGTGGCGTGCG
LOC_Os01g12340
OsAffx.9905.1.S1_at--974--4711Chr01:6732659..6732683 (25 bp)
GCTGTACTTCGACGGCGCCCACTTG
LOC_Os01g12340
OsAffx.9905.1.S1_at--850--4351Chr01:6732190..6732665 (25 bp)
CCACTTGACGGAGGCGGGTCTCTAT
NONE
OsAffx.9905.1.S1_at--597--7911Chr01:6732181..6732656 (25 bp)
GGAGGCGGGTCTCTATTCCCTCTCT
NONE
OsAffx.9905.1.S1_at--480--3653Chr02:33627624..33627643 (20 bp)
CTTACACTACAAGAAGGCGAGCGGC
NONE
OsAffx.9905.1.S1_at--458--9211Chr01:6731804..6731828 (25 bp)
TCCACCGTCTCGAAGTCCAGGAAGG
NONE
OsAffx.9905.1.S1_at--430--5371Chr01:6731733..6731757 (25 bp)
GAAGACGACTGCTACGGACACCGAG
NONE
OsAffx.9905.1.S1_at--579--2631Chr01:6731705..6731724 (20 bp)
AACCAGGACGGCATCGACTGACGCG
NONE
OsAffx.9905.1.S1_at--817--3931Chr01:6731628..6731716 (25 bp)
CGGCATCGACTGACGCGCTGCACGA
NONE
Target Sequence 
ACGGCTGCACGGTACCCAATCGGGTTCAGGGAGGACGTTCTGACGGTGTGCTGCGGAGGGGGCGGGCCGTACAACTTCAA
CGAGAGCGTGGCGTGCGGCGGCGCGGCGGCGACGGCATGCGAGGACCCGTCGGCGTCGCTGTACTTCGACGGCGCCCACT
TGACGGAGGCGGGTCTCTATTCCCTCTCTCTCTCCCTTACACTACAAGAAGGCGAGCGGCGGCGCGGAGGGGGTGATAGG
CGGAGGGGCGCAGAGGGGGTGACAGGCGGCGGACGGAGCAGAGGGGTGGCGGGAGCGGCGGCGGGCGGAGCGGTGGCGGG
CGAGCTCACCGGCCAAGGCCCCTCCACCGTCTCGAAGTCCAGGAAGGTGGCAGCAGGCGTCGCCATGGAGGAAAGAATGG
CGGCCGGTGAGGCGAAGACGACTGCTACGGACACCGAGAGGAAGCCAACCAGGACGGCATCGACTGACGCGCTGCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis