Browse Element(s) Details


Os.10146.1.S1_at

Description gb:AK060962.1
DB_XREF= gi:32970980
TID=Os.10146.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-A06, full insert sequence.
FL= gb:AK070287.1 gb:AK060962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5932011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59264OsAffx.6138.1.S1_at2/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264Os.47353.1.A1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59264OsAffx.23301.2.S1_at1/113+33683291..33689374Calreticulin family protein, expressed
LOC_Os03g59280OsAffx.3642.1.S1_s_at8/113+33691846..33692212NA
LOC_Os03g59290OsAffx.18938.2.S1_at10/113+33694301..33698230Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os03g59300Os.4980.1.S1_at11/113+33704394..33706711expressed protein
LOC_Os03g59310Os.11049.1.S1_at11/113+33707952..3370985640S ribosomal protein S2, putative, expressed
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed
LOC_Os03g59370OsAffx.25766.1.S1_at11/113+33735723..33736800Ubiquitin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10146.1.S1_at--400--6471Chr03:33711892..33711916 (25 bp)
GATAACTAGGCTTCACTTGTACAGC
LOC_Os03g59320
Os.10146.1.S1_at--667--2291Chr03:33712014..33712038 (25 bp)
AAATGTGACCATGCGATGATGTACG
LOC_Os03g59320
Os.10146.1.S1_at--997--231Chr03:33712044..33712068 (25 bp)
ATATCTGACGAGAACCTGGCGTTGA
LOC_Os03g59320
Os.10146.1.S1_at--1017--831Chr03:33712083..33712107 (25 bp)
ATGGAGACGGTCATCTGGCCAACAG
LOC_Os03g59320
Os.10146.1.S1_at--437--1391Chr03:33712106..33712130 (25 bp)
AGACGACACCAACACTGAGAAGATT
LOC_Os03g59320
Os.10146.1.S1_at--347--3091Chr03:33712139..33712163 (25 bp)
AATAATGCCTGATCTGTCTGCCTGA
LOC_Os03g59320
Os.10146.1.S1_at--834--4271Chr03:33712159..33712183 (25 bp)
CCTGACGCATACACTTCTTTTTGAG
LOC_Os03g59320
Os.10146.1.S1_at--257--2251Chr03:33712228..33712252 (25 bp)
AAATTATTCCTGCTCGATCGAGTCC
LOC_Os03g59320
Os.10146.1.S1_at--326--6871Chr03:33712413..33712437 (25 bp)
GTTTGGTCCATTTCATCGACAGTGT
LOC_Os03g59320
Os.10146.1.S1_at--767--10231Chr03:33712469..33712493 (25 bp)
TTTGGGTCAAGTTCGTCGACACAGT
LOC_Os03g59320
Os.10146.1.S1_at--18--711Chr03:33712501..33712525 (25 bp)
ATGAGTTACAACTCTTGCTGTTGGT
LOC_Os03g59320
Target Sequence 
GATAACTAGGCTTCACTTGTACAGCAAATGGATCAAGAAATGTGACCATGCGATGATGTACGAGAGGATATCTGACGAGA
ACCTGGCGTTGATGCGAGAGCGGCTCATGGAGACGGTCATCTGGCCAACAGACGACACCAACACTGAGAAGATTGGCTGA
AAAATAATGCCTGATCTGTCTGCCTGACGCATACACTTCTTTTTGAGTTGCTCAACTTAATTAAACTTTAGCTCGTTAGG
TAGAGCATTCTAAATTATTCCTGCTCGATCGAGTCCGATGTATATGTATGTATATTAAGTGTACAATTAATGTACCNAGC
CAGTGTAATGGGTACAAATTCAAGATGCATTCAGGGTTAAGTATAGATTAAGATCTAGCTGATAGCGTGTGGTTTAGTTT
NGGTCATTTGGTGAGTGAAGTGAAGAAGCTGCAAACTGTTTGGTCCATTTCATCGACAGTGTACAAGTACAACGTAGCAA
CTAATACTTGTAATTTGGGTCAAGTTCGTCGACACAGTTTATTTCATGAGTTACAACTCTTGCTGTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis