Browse Element(s) Details


Os.10298.1.S1_at

Description gb:AK121986.1
DB_XREF= gi:37991609
TID=Os.10298.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108P09, full insert sequence.
FL= gb:AK121986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3708010/11H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37050Os.55420.1.A1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.55420.1.A1_x_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S1_at11/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.51985.1.S2_at10/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050Os.18929.1.S1_s_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37050OsAffx.31368.1.S1_x_at1/1111+21370740..21375762Leucine Rich Repeat family protein, expressed
LOC_Os11g37060Os.54585.1.S1_at10/1111+21380293..21381601F-box domain containing protein, expressed
LOC_Os11g37070Os.8620.1.S1_at11/1111+21381848..21387407expressed protein
LOC_Os11g37070Os.55144.1.S1_s_at11/1111+21381848..21387407expressed protein
LOC_Os11g37080OsAffx.31339.1.S1_s_at11/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37080Os.10298.1.S1_at10/1111+21389097..21391069H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
LOC_Os11g37090Os.54176.1.S1_at11/1111+21391552..21395899Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os11g37100Os.49949.1.S1_at11/1111+21405019..21407820expressed protein
LOC_Os11g37100Os.49949.1.S2_at11/1111+21405019..21407820expressed protein
LOC_Os11g37110OsAffx.19207.1.S1_at10/1111+21408319..21409548hypothetical protein
LOC_Os11g37120OsAffx.19208.1.S1_at11/1111+21411589..21414660Nucleolar protein NOP5, putative
LOC_Os11g37120Os.51660.1.S1_at1/1111+21411589..21414660Nucleolar protein NOP5, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0001510biological_processRNA methylation
GO:0006364biological_processrRNA processing
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
GO:0030515molecular_functionsnoRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10298.1.S1_at--1092--7591Chr11:21390801..21390825 (25 bp)
GGGCAGATTCTAGTTTCTTAGCTTA
LOC_Os11g37080
Os.10298.1.S1_at--704--6831Chr11:21390813..21390837 (25 bp)
GTTTCTTAGCTTAAGACCTGGTGTT
LOC_Os11g37080
Os.10298.1.S1_at--313--5831Chr11:21390827..21390851 (25 bp)
GACCTGGTGTTTGTTGAAACATCAT
LOC_Os11g37080
Os.10298.1.S1_at--1025--5531Chr11:21390842..21390866 (25 bp)
GAAACATCATATCCTACATGCCCTC
LOC_Os11g37080
Os.10298.1.S1_at--871--2391Chr11:21390878..21390902 (25 bp)
AAACATTCATGTTCTTGTAGCCTGA
LOC_Os11g37080
Os.10298.1.S1_at--414--3611Chr11:21390891..21390915 (25 bp)
CTTGTAGCCTGATGTTAAGTTAGCA
LOC_Os11g37080
Os.10298.1.S1_at--992--1211Chr11:21390908..21390932 (25 bp)
AGTTAGCAGAGCGTTTCCAGCTCTT
LOC_Os11g37080
Os.10298.1.S1_at--239--7511Chr11:21390938..21390962 (25 bp)
GTGGAAGTTGAATCTCTATGGAACA
LOC_Os11g37080
Os.10298.1.S1_at--484--1211Chr11:21390964..21390988 (25 bp)
AGTTTTCATTTCTCTTCAGTACAAG
LOC_Os11g37080
Os.10298.1.S1_at--412--10591Chr11:21391030..21391054 (25 bp)
TTCTGACTCTTAATGGATGTTATCC
LOC_Os11g37080
Os.10298.1.S1_at--256--6251NONE
GATGTTATCCTATGAATCTTTACCC
NONE
Target Sequence 
GGGCAGATTCTAGTTTCTTAGCTTAAGACCTGGTGTTTGTTGAAACATCATATCCTACATGCCCTCTGCTCAATTGAAAA
CATTCATGTTCTTGTAGCCTGATGTTAAGTTAGCAGAGCGTTTCCAGCTCTTCATGTGTGGAAGTTGAATCTCTATGGAA
CAAAGTTTTCATTTCTCTTCAGTACAAGTTATGCATTTATAGTTAATCTTTAAANNNANNNAANNNNNATTCTGACTCTT
AATGGATGTTATCCTATGAATCTTTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis