Browse Element(s) Details


Os.10679.1.S1_at

Description gb:AK121866.1
DB_XREF= gi:37991489
TID=Os.10679.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033103H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103H03, full insert sequence.
FL= gb:AK121866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0374011/11Glutamine amidotransferase subunit pdxT, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008615biological_processpyridoxine biosynthesis
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005829cellular_componentcytosol
GO:0004359molecular_functionglutaminase activity
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10679.1.S1_at--512--1871Chr02:1567579..1567603 (25 bp)
ACGAGCACCTGCTATCTTGGATGTA
LOC_Os02g03740
Os.10679.1.S1_at--983--2831Chr02:1567541..1567565 (25 bp)
AAGTACTGGCGGATTGTCCTGTTCC
LOC_Os02g03740
Os.10679.1.S1_at--761--6691Chr02:1567521..1567545 (25 bp)
GTTCCATCGGATAGACCCAGTATTA
LOC_Os02g03740
Os.10679.1.S1_at--1119--2911Chr02:1566654..1566678 (25 bp)
AAGGCAAGGGAACATCCTCGCTACT
LOC_Os02g03740
Os.10679.1.S1_at--367--4851Chr02:1566635..1566659 (25 bp)
GCTACTGCTTTTCACCCAGAATTGA
LOC_Os02g03740
Os.10679.1.S1_at--162--10051Chr02:1566510..1566624 (25 bp)
TAGATGGCATCGGTTCTTCCTGGAC
LOC_Os02g03740
Os.10679.1.S1_at--940--8831Chr02:1566471..1566495 (25 bp)
TGATACAAAAGCCTTCTCTGCTCTC
LOC_Os02g03740
Os.10679.1.S1_at--107--1471Chr02:1566406..1566430 (25 bp)
AGAATAAGCCTCTTGATCTACCCAT
LOC_Os02g03740
Os.10679.1.S1_at--844--9951Chr02:1566388..1566412 (25 bp)
TACCCATCTTCGAGTAGCTCATGAA
LOC_Os02g03740
Os.10679.1.S1_at--52--1191Chr02:1566273..1566297 (25 bp)
AGTACGTGTGATGCTCAGTCCAAAT
LOC_Os02g03740
Os.10679.1.S1_at--773--591Chr02:1566208..1566232 (25 bp)
ATGCCGTCCCAAACATTGTGATTTT
LOC_Os02g03740
Target Sequence 
ACGAGCACCTGCTATCTTGGATGTAGGTTCAAATGTTGAAGTACTGGCGGATTGTCCTGTTCCATCGGATAGACCCAGTA
TTACAATAGCGTCTGGAGAGGGTGTTGAGGAAGAAGTGTACTCGAAAGATCGGGTAATTGTTGCTGTAAGGCAAGGGAAC
ATCCTCGCTACTGCTTTTCACCCAGAATTGACATCAGACTCTAGATGGCATCGGTTCTTCCTGGACATGGATAAAGAATC
TGATACAAAAGCCTTCTCTGCTCTCTCTCTCTCATCATCTTCAAGAGACACTCAAGATGGGTCAAAGAATAAGCCTCTTG
ATCTACCCATCTTCGAGTAGCTCATGAAAGAAAAGAAAGACTGTTAAACATTGAAGAACAGAAGATGAAGAAGCTAACAA
AATTTTGAGCATTCAGTTGGTGACAATAGAGAAAGTTGAGTACGTGTGATGCTCAGTCCAAATGTGTTATTGTTGTCAAA
CTGTACCAATCAAAATAATGATAATGCCGTCCCAAACATTGTGATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis