Browse Element(s) Details


Os.1071.1.S1_at

Description gb:AK070131.1
DB_XREF= gi:32980155
TID=Os.1071.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0698A04.24 (P0698A04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023046G14, full insert sequence.
FL= gb:AK070131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0304010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02990OsAffx.22815.2.S1_at11/111+1134043..1134426hypothetical protein
LOC_Os01g02999NANA1+1135682..1136375NA
LOC_Os01g03010OsAffx.10819.1.S1_at10/111+1140359..1141299hypothetical protein
LOC_Os01g03020Os.1070.1.S1_at11/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03020OsAffx.30685.1.S1_x_at1/111+1142631..1151896Leucyl-tRNA synthetase, putative, expressed
LOC_Os01g03030Os.38065.1.S1_at11/111+1152052..1155249alanyl-tRNA synthetase, putative, expressed
LOC_Os01g03040Os.1071.1.S1_at10/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.A1_at3/111+1156955..1161421expressed protein
LOC_Os01g03040OsAffx.31141.1.S1_at2/111+1156955..1161421expressed protein
LOC_Os01g03050Os.54619.1.S1_at1/111+1162673..1164673Oxidoreductase NAD-binding domain containing protein, expressed
LOC_Os01g03060Os.12185.1.S1_at11/111+1165450..1167932expressed protein
LOC_Os01g03070Os.28076.2.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S1_at11/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03070Os.28076.1.S2_at10/111+1168698..1176174transposon protein, putative, unclassified, expressed
LOC_Os01g03080Os.56995.1.S1_at11/111+1178119..1178949expressed protein
LOC_Os01g03090Os.1177.1.S1_a_at11/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03090Os.45490.1.S1_x_at9/111+1180214..1183501SLL2, putative, expressed
LOC_Os01g03100Os.23963.1.A1_at11/111+1183469..1187815zinc finger family protein, putative, expressed
LOC_Os01g03100Os.30607.1.S1_at10/111+1183469..1187815zinc finger family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1071.1.S1_at--102--7991Chr01:1160822..1160845 (24 bp)
GGATGCTCATCTTCACTGCTAAGGG
LOC_Os01g03040
Os.1071.1.S1_at--536--3331Chr01:1160679..1160832 (25 bp)
CACTGCTAAGGGTCGGCTGGAGAAA
LOC_Os01g03040
Os.1071.1.S1_at--189--2311Chr01:1160657..1160681 (25 bp)
AAAGGACAGTACTTCCCAGTGACCG
LOC_Os01g03040
Os.1071.1.S1_at--19--1151NONE
AGTCCAGCGCTTTGATGCTGCAGGA
NONE
Os.1071.1.S1_at--1005--4451Chr01:1157403..1157427 (25 bp)
GCCTGTTGGGTCCTTAACCTTTGAG
LOC_Os01g03040
Os.1071.1.S1_at--1051--6471Chr01:1157355..1157379 (25 bp)
GATACTCGCATTCATCTTCGAGCGG
LOC_Os01g03040
Os.1071.1.S1_at--147--4671Chr01:1157334..1157358 (25 bp)
GCGGGTTCGCATAAAGGTCGGCCCT
LOC_Os01g03040
Os.1071.1.S1_at--707--5811Chr01:1157249..1157273 (25 bp)
GACCCTTTCTTTGTGTGGTTCTATG
LOC_Os01g03040
Os.1071.1.S1_at--999--6551Chr01:1157139..1157163 (25 bp)
GATTCAGTTCAGTCATCATTCCAGG
LOC_Os01g03040
Os.1071.1.S1_at--326--71Chr01:1157122..1157146 (25 bp)
ATTCCAGGATGTTCAGTTCAGTTTA
LOC_Os01g03040
Os.1071.1.S1_at--519--6271Chr01:1157029..1157053 (25 bp)
GATGTCTGCCTGTACCTGTAAATTG
LOC_Os01g03040
Target Sequence 
GGATGCTCATCTTCACTGCTAAGGGTCGGCTGGAGAAAGGACAGTACTTCCCAGTGACCGCAGTCCAGCGCTTTGATGCT
GCAGGAAAGAGGATTGAGAATGGCGTGTATTTGGGGCCTGTTGGGTCCTTAACCTTTGAGGGGAGGCTGTCATGGAAGAN
GAAGATACTCGCATTCATCTTCGAGCGGGTTCGCATAAAGGTCGGCCCTTTCGGCCCCCTCGAAATCAGCCTCGGAGGTG
GCAATGATGGTAGGGAGCCGAGCACAAAGGACCCTTTCTTTGTGTGGTTCTATGTTGATGAGGAAATCGCTGTGGCNCAA
GGCAGAGGAGGGGGAGTGGCTTACTGGTGCAGATGTAAGCGTGTTCCATGAACTNTGAAGATTCAGTTCAGTCATCATTC
CAGGATGTTCAGTTCAGTTTATGTATAGATAATTTTTCATCTTCTACATGTGTAAAAAAACGAAGTATTGAAAATGATAC
CAGTTCGATGATGTCTGCCTGTACCTGTAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis