Browse Element(s) Details


Os.10735.1.S1_at

Description gb:AK058903.1
DB_XREF= gi:32968921
TID=Os.10735.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10735 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, sequence homologous to acyl carrier protein II gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B10, full insert sequence.
FL= gb:AK058903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3686011/11Acyl carrier protein II, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36800Os.12414.1.S1_at11/119+21225480..212288503-dehydroquinate synthase, putative, expressed
LOC_Os09g36810Os.49945.1.S1_at11/119+21229822..21236330Glycosyl hydrolases family 35 protein, expressed
LOC_Os09g36820OsAffx.18015.1.S1_at11/119+21239269..21242101expressed protein
LOC_Os09g36830OsAffx.6495.1.S1_s_at11/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36830OsAffx.6495.1.S1_at10/119+21242726..21245347SKP1-like protein 1B, putative, expressed
LOC_Os09g36840OsAffx.24469.1.S1_x_at1/119+21245498..21246097hypothetical protein
LOC_Os09g36850OsAffx.6497.1.S1_s_at11/119+21251392..21252385expressed protein
LOC_Os09g36860Os.10735.1.S1_at11/119+21253796..21256372Acyl carrier protein II, chloroplast precursor, putative, expressed
LOC_Os09g36870OsAffx.6498.1.S1_at11/119+21265843..21267261hypothetical protein
LOC_Os09g36880Os.14530.2.S1_x_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.14530.1.S1_at11/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36880Os.32889.2.S1_at1/119+21270171..21272107GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g36890Os.8267.1.S1_at11/119+21274239..21275819hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g36900Os.49552.1.S1_at11/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed
LOC_Os09g36900OsAffx.28269.1.S1_x_at1/119+21275966..21280110WD-40 repeat protein MSI1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10735.1.S1_at--740--9731Chr09:21254841..21254865 (25 bp)
TCAATGTCAGTTCAGTCTCTTTCGC
LOC_Os09g36860
Os.10735.1.S1_at--1--5511Chr09:21254804..21254828 (25 bp)
GAACAATGTGGCTTTCACTCTGCAG
LOC_Os09g36860
Os.10735.1.S1_at--1083--3431Chr09:21254645..21254784 (25 bp)
CAGTTCTCCGTGCTGCCAAAAAGGA
LOC_Os09g36860
Os.10735.1.S1_at--430--2711Chr09:21254589..21254613 (25 bp)
AAGCAGCTTGTACTTCCTGAAGGCA
LOC_Os09g36860
Os.10735.1.S1_at--170--3631Chr09:21254577..21254601 (25 bp)
CTTCCTGAAGGCACTGACGTTACTG
LOC_Os09g36860
Os.10735.1.S1_at--634--5751Chr09:21254562..21254586 (25 bp)
GACGTTACTGGTGCCTCTAAGTTCA
LOC_Os09g36860
Os.10735.1.S1_at--375--7211Chr09:21254107..21254131 (25 bp)
GTCGATGAATCAAGCGCGCAGTCAA
LOC_Os09g36860
Os.10735.1.S1_at--222--631Chr09:21254067..21254091 (25 bp)
ATGCTGCTGAGCTCATCGACAAGAT
LOC_Os09g36860
Os.10735.1.S1_at--933--6611Chr09:21253973..21253997 (25 bp)
GTTGTTGTTCGATGTCCATTTTTCT
LOC_Os09g36860
Os.10735.1.S1_at--518--431Chr09:21253904..21253928 (25 bp)
ATCATTGGCTGTTTTGCGATGCTAT
LOC_Os09g36860
Os.10735.1.S1_at--588--3691Chr09:21253826..21253850 (25 bp)
CTATTTTCGCTAGGTCTTTCGTCAA
LOC_Os09g36860
Target Sequence 
TCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGACACAAAGATTT
GCAGTTCTCCGTGCTGCCAAAAAGGAAACNGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCCTGAAGG
CACTGACGTTACTGGTGCCTCTAAGTTCACCGATCTTGGTGCTGATTCCCTGGATACGGTTGAGATTGTTATGGGTCTTG
AAGAGGCTTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGAC
AAGATTGTTTCTAATGCAAAGTAAACTCAANTTCGTTGGAATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTT
GTTCGATGTCCATTTTTCTNTGCTAGATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGC
GATGCTATGACATTTTAAGCTATTGAAGTTGTTGAAAAAGAAATTTCATTGCCNGAGGAAATCTATTTTCGCTAGGTCTT
TCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis