Browse Element(s) Details


Os.10838.3.S1_at

Description gb:AK063549.1
DB_XREF= gi:32973567
TID=Os.10838.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D08, full insert sequence.
FL= gb:AK063549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3031011/11Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os04g513301/11Maltose excess protein 1-like, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30290Os.41695.5.S1_x_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.5300.2.S1_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.17065.1.A1_s_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290Os.6094.1.S1_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30300OsAffx.2806.1.S1_at11/112+18019852..18021562MYND finger family protein, expressed
LOC_Os02g30300OsAffx.2806.1.S1_x_at11/112+18019852..18021562MYND finger family protein, expressed
LOC_Os02g30310Os.10838.1.S1_a_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.49674.1.S1_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.10838.3.S1_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.50454.1.S2_at5/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30320Os.27642.1.S1_at11/112+18053162..18054105expressed protein
LOC_Os02g30320Os.55374.1.S1_s_at11/112+18053162..18054105expressed protein
LOC_Os02g30330OsAffx.12287.1.S1_at11/112+18062387..18064187hypothetical protein
LOC_Os02g30330OsAffx.12287.1.S1_s_at11/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.54560.1.S1_x_at4/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.10263.1.S1_at2/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.45902.1.A1_x_at1/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.51841.1.S1_x_at1/112+18062387..18064187hypothetical protein
LOC_Os02g30340NANA2+18066311..18068836retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0007154biological_processcell communication
GO:0007275biological_processdevelopment
GO:0009629biological_processresponse to gravity
GO:0016925biological_processprotein sumoylation
GO:0009706cellular_componentchloroplast inner membrane
GO:0003824molecular_functioncatalytic activity
GO:0005363molecular_functionmaltose transporter activity
GO:0019948molecular_functionSUMO activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10838.3.S1_at--193--5231Chr02:18042858..18043028 (25 bp)
GAATATTAGATTCAGTTGCCATACT
LOC_Os02g30310
Os.10838.3.S1_at--972--1231Chr02:18043017..18043041 (25 bp)
AGTTGCCATACTAATGGAGCTGACA
LOC_Os02g30310
Os.10838.3.S1_at--908--7911Chr02:18043055..18043079 (25 bp)
GGATAGAACTTTGTACCCCATGCTC
LOC_Os02g30310
Os.10838.3.S1_at--643--2091Chr02:18043086..18043110 (25 bp)
ACATCATTTCTTAAGCACCCTGCTT
LOC_Os02g30310
Os.10838.3.S1_at--671--9791Chr02:18043097..18043121 (25 bp)
TAAGCACCCTGCTTGCAGGATTGCA
LOC_Os02g30310
Os.10838.3.S1_at--265--4611Chr02:18043142..18043166 (25 bp)
GCTAAATTTTAGCTACTCATTATTG
LOC_Os02g30310
Os.10838.3.S1_at--355--1011Chr02:18043168..18043192 (25 bp)
AGGATTCAGAAACTACTAGGCTAGG
LOC_Os02g30310
Os.10838.3.S1_at--313--3691Chr02:18043183..18043207 (25 bp)
CTAGGCTAGGGTTGCACTTTGGTGC
LOC_Os02g30310
Os.10838.3.S1_at--46--7791Chr02:18043203..18043227 (25 bp)
GGTGCTAATTGTAACTTCATTCTCT
LOC_Os02g30310
Os.10838.3.S1_at--495--3592Chr02:18043220..18043244 (25 bp)
CATTCTCTTTTTCTGTTGTACTGCA
LOC_Os02g30310
Os.10838.3.S1_at--1138--1971Chr02:18043239..18043263 (25 bp)
ACTGCATCTTGACATGCTTGATGAA
LOC_Os02g30310
Target Sequence 
GAATATTAGATTCAGTTGCCATACTAATGGAGCTGACAAGATAGTTGACTTGGATAGAACTTTGTACCCCATGCTCAAGC
CCACATCATTTCTTAAGCACCCTGCTTGCAGGATTGCATGTGTTTGAAAATGTTTCATGCTAAATTTTAGCTACTCATTA
TTGTAGGATTCAGAAACTACTAGGCTAGGGTTGCACTTTGGTGCTAATTGTAACTTCATTCTCTTTTTCTGTTGTACTGC
ATCTTGACATGCTTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10838.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis