Browse Element(s) Details


Os.10844.1.S1_at

Description gb:AK060892.1
DB_XREF= gi:32970910
TID=Os.10844.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C02, full insert sequence.
FL= gb:AK098845.1 gb:AK104483.1 gb:AK060892.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3393011/11Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008360biological_processregulation of cell shape
GO:0009414biological_processresponse to water deprivation
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0018346biological_processprotein amino acid prenylation
GO:0048509biological_processregulation of meristem development
GO:0004311molecular_functionfarnesyltranstransferase activity
GO:0008318molecular_functionprotein prenyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10844.1.S1_at--1086--7571Chr09:20026093..20026117 (25 bp)
GGGCTATTCTGGCTAACCCTCAGAA
LOC_Os09g33930
Os.10844.1.S1_at--879--651Chr09:20026117..20026141 (25 bp)
ATGAAAGCCCCTGGAGATACCTCAA
LOC_Os09g33930
Os.10844.1.S1_at--988--91Chr09:20026222..20026246 (25 bp)
ATTCGACCTGCGTATTTGCTTTGAG
LOC_Os09g33930
Os.10844.1.S1_at--231--4771Chr09:20026250..20026274 (25 bp)
GCTGCTCGATCTTCTTCAAATTGGT
LOC_Os09g33930
Os.10844.1.S1_at--390--6951Chr09:20026347..20026371 (25 bp)
GTAGATGCTGATCTTGCGACTGCAA
LOC_Os09g33930
Os.10844.1.S1_at--81--3431Chr09:20026386..20026410 (25 bp)
CAGAGATGTGATCCCCTGCGGATAA
LOC_Os09g33930
Os.10844.1.S1_at--491--7031Chr09:20026424..20026448 (25 bp)
GTACAGGACCACTATTTCTTCTCAA
LOC_Os09g33930
Os.10844.1.S1_at--572--2371Chr09:20026447..20026471 (25 bp)
AAACCTGAAGCATGCAGTGGCCTCC
LOC_Os09g33930
Os.10844.1.S1_at--844--431Chr09:20026498..20026522 (25 bp)
ATCTTCGTGTGATTCTGGGCGTTGA
LOC_Os09g33930
Os.10844.1.S1_at--478--6151Chr09:20026521..20026545 (25 bp)
GAGGTGCCTAGCTACATTTGTTATG
LOC_Os09g33930
Os.10844.1.S1_at--643--10271Chr09:20026549..20026573 (25 bp)
TTTCCTTGGGCATAACTGATCACTG
LOC_Os09g33930
Target Sequence 
GGGCTATTCTGGCTAACCCTCAGAATGAAAGCCCCTGGAGATACCTCAAAGGCCTGTACAAGGGTGAAAATAACTTGCTG
ATGGCTNGATGAGCGCATCTCTGATGTTTGTCTCAAGGTCCTGAAACATGATTCGACCTGCGTATTTGCTTTGAGCTTGC
TGCTCGATCTTCTTCAAATTGGTTTACAACCTTCAGATGAACTCAAAGGAACTATCGAAGCAATAAAGAACTCTGATCCT
GAAGCAGATGAAGCAGTAGATGCTGATCTTGCGACTGCAATCTGCTCAATATTGCAGAGATGTGATCCCCTGCGGATAAA
TTACTGGTCCTGGTACAGGACCACTATTTCTTCTCAAACCTGAAGCATGCAGTGGCCTCCATGAGGTCATAATGGAGATA
TCTTCTATCTTCGTGTGATTCTGGGCGTTGAGGTGCCTAGCTACATTTGTTATGAACTTTCCTTGGGCATAACTGATCAC
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis