Browse Element(s) Details


Os.10895.1.S1_at

Description gb:AK071237.1
DB_XREF= gi:32981260
TID=Os.10895.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086E09, full insert sequence.
FL= gb:AK071237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5288011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52830Os.51956.1.S1_at11/112+32294664..32298113Lipase family protein, expressed
LOC_Os02g52840Os.53448.1.S1_at10/112+32304930..32306315Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os02g52850Os.53369.1.S1_at11/112+32307084..32310123D-mannose binding lectin family protein, expressed
LOC_Os02g52860Os.8496.1.S1_at11/112+32313510..32317463Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os02g52870OsAffx.12618.1.S1_at10/112+32318605..32320085Zinc finger, C3HC4 type family protein
LOC_Os02g52880Os.10895.1.S1_at11/112+32320298..32324247expressed protein
LOC_Os02g52890OsAffx.3050.1.S1_at11/112+32329755..32330054hypothetical protein
LOC_Os02g52900Os.49310.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52900Os.48084.1.S1_at11/112+32343223..32347038expressed protein
LOC_Os02g52910Os.54736.1.S1_at11/112+32344119..32346794hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os02g52920Os.26016.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.37785.1.S1_at11/112+32347379..32350582emp24/gp25L/p24 family protein, expressed
LOC_Os02g52920Os.18881.1.S1_at1/112+32347379..32350582emp24/gp25L/p24 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10895.1.S1_at--484--5691Chr02:32321636..32321983 (25 bp)
GACTTAGAGGCTTCACCAGTTGTAG
LOC_Os02g52880
Os.10895.1.S1_at--744--7951Chr02:32321607..32321631 (25 bp)
GGATAATCCTCCTGATCTAGCAGAT
LOC_Os02g52880
Os.10895.1.S1_at--622--6531Chr02:32321585..32321609 (25 bp)
GATTTTGTACCATCAGGTGTCCCAA
LOC_Os02g52880
Os.10895.1.S1_at--273--1031Chr02:32321539..32321563 (25 bp)
AGGTCACACCTACAAATGTTCCTCG
LOC_Os02g52880
Os.10895.1.S1_at--1076--6691Chr02:32321522..32321546 (25 bp)
GTTCCTCGTCAAAATGATGTGCCCA
LOC_Os02g52880
Os.10895.1.S1_at--109--6891Chr02:32321067..32321091 (25 bp)
GTATTTGACATCATGTCCCCGTTGT
LOC_Os02g52880
Os.10895.1.S1_at--1074--4191Chr02:32321053..32321074 (22 bp)
CCCGTTGTTCCTTTCTGAGGTATCA
LOC_Os02g52880
Os.10895.1.S1_at--267--5271Chr02:32320519..32320543 (25 bp)
GAATGCAGCATACACCGCTGGATTT
LOC_Os02g52880
Os.10895.1.S1_at--285--10771Chr02:32320496..32320520 (25 bp)
TTGAGGCTGGCTTCGAGACTATGCT
LOC_Os02g52880
Os.10895.1.S1_at--423--5991Chr02:32320482..32320506 (25 bp)
GAGACTATGCTCAATTCAGGTTTAA
LOC_Os02g52880
Os.10895.1.S1_at--696--9811Chr02:32320460..32320484 (25 bp)
TAAAAGGACAGGCTTCTCGGAAGTA
LOC_Os02g52880
Target Sequence 
GACTTAGAGGCTTCACCAGTTGTAGGCNAAGGATAATCCTCCTGATCTAGCAGATTTTGTACCATCAGGTGTCCCAAATT
CTGCAGAACCAATTGAGAAGGTCACACCTACAAATGTTCCTCGTCAAAATGATGTGCCCAAAGAGAAAACATGTCTTCCT
GAAGTGAAGGCTAAGCCTAAAGTTCAGAACAAGGGTGCAGAAAAGACGCAGAGCAAGATACCTACAAACGGAGCTAATGT
TGAGAAATTTGTAAATGATGTATTTGACATCATGTCCCCGTTGTTCCTTTCTGAGGTATCAAAGAAACTGAATGTTAAGC
AGGAAGAACTTTCTTCTATATTTGATGGCTTTAAAGAACAAGCCACTATTGATTTGGAGAGTGTAACGACGAGTCTGAAG
AATGCAGCATACACCGCTGGATTTGAGGCTGGCTTCGAGACTATGCTCAATTCAGGTTTAAAAGGACAGGCTTCTCGGAA
GTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis