Browse Element(s) Details


Os.10972.1.S1_at

Description gb:AK121636.1
DB_XREF= gi:37991259
TID=Os.10972.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative amino acid transport protein (P0471B04.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051N12, full insert sequence.
FL= gb:AK065286.1 gb:AK119529.1 gb:AK121636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6567011/11amino acid permease 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65650Os.12640.1.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65650Os.12640.2.S1_at11/111+38438961..38445515Leucine Rich Repeat family protein, expressed
LOC_Os01g65660Os.17259.1.S1_at11/111+38444788..38447609amino acid permease, putative, expressed
LOC_Os01g65670Os.10972.2.S1_x_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65670Os.10972.1.S1_at11/111+38460282..38464619amino acid permease 6, putative, expressed
LOC_Os01g65680Os.10240.1.S1_at11/111+38465963..38469488Catalytic LigB subunit of aromatic ring-opening dioxygenase family protein, expressed
LOC_Os01g65690Os.27629.1.S1_at11/111+38471634..384729904,5-DOPA dioxygenase extradiol, putative, expressed
LOC_Os01g65692Os.6626.1.S1_x_at1/111+38473872..38474647expressed protein
LOC_Os01g65694Os.55613.1.S1_at11/111+38473922..38474867expressed protein
LOC_Os01g65700Os.12038.1.S1_at11/111+38475533..38476487expressed protein
LOC_Os01g65710OsAffx.23928.1.S1_at11/111+38478214..38478891expressed protein
LOC_Os01g65720Os.15928.1.S1_at11/111+38480994..38483864glycosyl hydrolase family protein 43, putative, expressed
LOC_Os01g65730OsAffx.21821.1.S1_at11/111+38484404..38486621SET domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10972.1.S1_at--1121--2371Chr01:38460593..38460617 (25 bp)
AAACGCAGCTCTGAACCCGGATGGA
LOC_Os01g65670
Os.10972.1.S1_at--1085--831Chr01:38460573..38460597 (25 bp)
ATGGACGCATGCAGCCGATGAGATT
LOC_Os01g65670
Os.10972.1.S1_at--841--10132Chr11:17421831..17421850 (20 bp)
TATGCATGTAGTACTACTCCTACTA
NONE
Os.10972.1.S1_at--1080--2011Chr01:38460528..38460552 (25 bp)
ACTACTTTTGTTGCTGTACTCGTAC
LOC_Os01g65670
Os.10972.1.S1_at--541--4731Chr01:38460516..38460540 (25 bp)
GCTGTACTCGTACTAGTTGCTGGTG
LOC_Os01g65670
Os.10972.1.S1_at--1081--6671Chr01:38460501..38460525 (25 bp)
GTTGCTGGTGTAATTTGGCTGTCGT
LOC_Os01g65670
Os.10972.1.S1_at--1152--8331Chr01:38460485..38460509 (25 bp)
GGCTGTCGTGTTACAAGCTACTACT
LOC_Os01g65670
Os.10972.1.S1_at--206--10051Chr01:38460458..38460482 (25 bp)
TAGTACAAGCCCCTCTGTTTTTATA
LOC_Os01g65670
Os.10972.1.S1_at--884--8031Chr01:38460406..38460430 (25 bp)
GGAGTATGGTTATCCTATGGACAAA
LOC_Os01g65670
Os.10972.1.S1_at--339--3871Chr01:38460380..38460404 (25 bp)
CTGTGTACGTTATTCCGGTTGGGAT
LOC_Os01g65670
Os.10972.1.S1_at--1070--3951Chr01:38460365..38460389 (25 bp)
CGGTTGGGATCGTCAAGCATAGCAT
LOC_Os01g65670
Target Sequence 
AAACGCAGCTCTGAACCCGGATGGACGCATGCAGCCGATGAGATTATGCATGTAGTACTACTCCTACTACTTTTGTTGCT
GTACTCGTACTAGTTGCTGGTGTAATTTGGCTGTCGTGTTACAAGCTACTACTANNNNCTAGTACAAGCCCCTCTGTTTT
TATACCTCTGAATTTAGCAAATGGGACTTGAGGAGTATGGTTATCCTATGGACAAAACTGTGTACGTTATTCCGGTTGGG
ATCGTCAAGCATAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis