Browse Element(s) Details


Os.10987.1.S1_at

Description gb:AF303468.1
DB_XREF= gi:21685575
GEN=tufM
TID=Os.10987.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10987 (NCBI UniGene Cluster)
DEF=Oryza sativa elongation factor Tu (tufM) mRNA, complete cds; nuclear gene for mitochondrial product.
PROD=elongation factor Tu
FL= gb:AK058640.1 gb:AK102069.1 gb:AF303468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6341011/11Elongation factor Tu, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63360Os.20351.1.S1_at11/113+35744991..35747824expressed protein
LOC_Os03g63370Os.48050.1.S1_at11/113+35748960..35753605Polyphosphoinositide-binding protein, putative, expressed
LOC_Os03g63380Os.5245.1.S1_at11/113+35756252..35758496expressed protein
LOC_Os03g63390Os.11477.1.S1_at11/113+35759693..35760450Chemocyanin precursor, putative, expressed
LOC_Os03g63400Os.12250.1.S1_at11/113+35761045..35763288NAC domain containing protein, expressed
LOC_Os03g63410Os.10987.1.S1_at11/113+35765356..35769135Elongation factor Tu, mitochondrial precursor, putative, expressed
LOC_Os03g63420Os.50912.1.S1_at11/113+35769297..35771430expressed protein
LOC_Os03g63430Os.10604.1.S2_at11/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63430Os.10604.1.S1_at10/113+35772907..35776928PCI domain containing protein, expressed
LOC_Os03g63440OsAffx.25808.1.S1_at11/113+35779584..35782332hypothetical protein
LOC_Os03g63450Os.18419.1.S1_at11/113+35785019..35793232SnRK1-interacting protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10987.1.S1_at--51--4411Chr03:35765961..35765985 (25 bp)
GCCACACAGCCTTCTTGTCAAATTA
LOC_Os03g63410
Os.10987.1.S1_at--308--10491Chr03:35765939..35765963 (25 bp)
TTACAGTCCACAGTTCTACTTTAGG
LOC_Os03g63410
Os.10987.1.S1_at--706--10431Chr03:35765919..35765943 (25 bp)
TTAGGACTGCCGATGTCACTGGAAA
LOC_Os03g63410
Os.10987.1.S1_at--513--10771Chr03:35765835..35765859 (25 bp)
TTGAGTTGATATCACCTGTTCCCCT
LOC_Os03g63410
Os.10987.1.S1_at--178--5871Chr03:35765720..35765740 (21 bp)
GAGCCAGGCCAGAGATTTGCGCTGA
LOC_Os03g63410
Os.10987.1.S1_at--1155--8551Chr03:35765676..35765700 (25 bp)
TGGTGCCGGAGTTGTTTCCAAAGTT
LOC_Os03g63410
Os.10987.1.S1_at--713--5231Chr03:35765587..35765611 (25 bp)
GAATCAGATCTATCCGACCGGCAAT
LOC_Os03g63410
Os.10987.1.S1_at--337--8431Chr03:35765491..35765515 (25 bp)
GGCCACCATTCCGAACTAGTTATTG
LOC_Os03g63410
Os.10987.1.S1_at--330--71Chr03:35765470..35765494 (25 bp)
ATTGCTTTTCTTTTTCCATGTCTGG
LOC_Os03g63410
Os.10987.1.S1_at--733--1811Chr03:35765429..35765453 (25 bp)
ACGCGTTTAGTCATCTTAACACGTT
LOC_Os03g63410
Os.10987.1.S1_at--473--10371Chr03:35765405..35765429 (25 bp)
TTTTTTGCCCATAGCTTGGTGACTA
LOC_Os03g63410
Target Sequence 
GCCACACAGCCTTCTTGTCAAATTACAGTCCACAGTTCTACTTTAGGACTGCCGATGTCACTGGAAAAGTTGTGTTACCT
GATGGCGTGGAAATGGTTATGCCTGGTGATAATGTAACTGCAGGATTTGAGTTGATATCACCTGTTCCCCTTGAGCCAGG
CCAGAGATTTGCGCTGAGGGAAGGAGGGAGGACAGTTGGTGCCGGAGTTGTTTCCAAAGTTTACAGCTGATCTGTTTCCA
GTTTTTTNCTGCGTAGCGAATTTAGTAACAAATGAATGTTCATAGGGAATCAGATCTATCCGACCGGCAATATGAGAGCA
AAAGAGCGAGGGACTCGCAGAGCATCTTCTCTGAATTCATGAGATGCAGGGATCGTTGGCTCGGCCACCATTCCGAACTA
GTTATTGCTTTTCTTTTTCCATGTCTGGTTGTTGCTGTATAACAACGCGTTTAGTCATCTTAACACGTTTTTTTGCCCAT
AGCTTGGTGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis