Browse Element(s) Details


Os.11191.1.S1_at

Description gb:AK058770.1
DB_XREF= gi:32968788
TID=Os.11191.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-001-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G05, full insert sequence.
FL= gb:AK058770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5610011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56060OsAffx.26625.1.S1_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_x_at9/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56060Os.5753.1.S1_at7/114+33167555..33172574protein kinase family protein, putative, expressed
LOC_Os04g56070Os.2223.1.S1_at11/114+33175418..33178905COP9 signalosome complex subunit 5b, putative, expressed
LOC_Os04g56080OsAffx.26627.1.S1_x_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56080OsAffx.26627.1.S1_at11/114+33180497..33183043D-mannose binding lectin family protein, expressed
LOC_Os04g56090OsAffx.26627.1.S1_x_at2/114+33188294..33190738D-mannose binding lectin family protein
LOC_Os04g56100Os.11191.1.S1_at11/114+33196249..33197036expressed protein
LOC_Os04g56110Os.28305.1.S1_at11/114+33199570..33202132Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.4190.1.S1_x_at11/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120Os.56111.1.S1_at9/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56120OsAffx.29815.1.S1_x_at1/114+33202484..33204235Protein kinase domain containing protein, expressed
LOC_Os04g56130OsAffx.26628.1.S1_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.26628.1.S1_x_at11/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56130OsAffx.29815.1.S1_x_at1/114+33207787..33209146Protein kinase domain containing protein
LOC_Os04g56140Os.17447.1.S1_at11/114+33210026..33217145expressed protein
LOC_Os04g56150NANA4+33218121..33218690ethylene response factor 1, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11191.1.S1_at--1155--5751Chr04:33196543..33196567 (25 bp)
GACGAGTTGTTGCTTATCTGCTCGT
LOC_Os04g56100
Os.11191.1.S1_at--357--9491Chr04:33196527..33196551 (25 bp)
TCTGCTCGTGTTCGTATTTGGTTAC
LOC_Os04g56100
Os.11191.1.S1_at--754--2031Chr04:33196504..33196528 (25 bp)
ACTATAGTGGTTAGGCAGGCTGTCA
LOC_Os04g56100
Os.11191.1.S1_at--409--10572Chr04:33196477..33196501 (25 bp)
TTCTCTAACTATTTGCTCTTATTTG
LOC_Os04g56100
Os.11191.1.S1_at--846--4811Chr04:33196463..33196487 (25 bp)
GCTCTTATTTGTTTATTCGCACGAT
LOC_Os04g56100
Os.11191.1.S1_at--163--51Chr04:33196383..33196407 (25 bp)
ATTGTCTAAATCGTTGTGTGCTGCC
LOC_Os04g56100
Os.11191.1.S1_at--125--7471Chr04:33196368..33196392 (25 bp)
GTGTGCTGCCTGAATCATATTACTT
LOC_Os04g56100
Os.11191.1.S1_at--514--7671Chr04:33196339..33196363 (25 bp)
GGGATTGCTGCCTGAATCATATAAG
LOC_Os04g56100
Os.11191.1.S1_at--762--6951Chr04:33196312..33196336 (25 bp)
GTAGAAGCCAAATGAAATGCCTCTT
LOC_Os04g56100
Os.11191.1.S1_at--14--6031Chr04:33196269..33196293 (25 bp)
GAGAGGTCCTTAACATGAATTGAGA
LOC_Os04g56100
Os.11191.1.S1_at--974--31Chr04:33196251..33196275 (25 bp)
ATTGAGAATTTTGCCGGCTTAGCCG
LOC_Os04g56100
Target Sequence 
GACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT
GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGT
ATTGTCTAAATCGTTGTGTGCTGCCTGAATCATATTACTTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCC
AAATGAAATGCCTCTTCAAATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGGCTTAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis