Browse Element(s) Details


Os.11330.1.S2_at

Description gb:AK105524.1
DB_XREF= gi:32990733
TID=Os.11330.1
CNT=73
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative plasma membrane intrinsic protein (OJ1047_A06.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G02, full insert sequence.
FL= gb:AK119656.1 gb:AK105524.1 gb:AK103938.1 gb:AK060712.1 gb:AK103970.1 gb:AF062393.1 gb:AK072519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g282603/11Late embryogenesis abundant protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28190OsAffx.13093.1.S1_x_at11/113+16206420..16206953Dirigent-like protein, expressed
LOC_Os03g28204OsAffx.22940.2.S1_s_at11/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.1.S1_s_at10/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_x_at9/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.5.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.2.S1_at8/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.22940.3.S1_x_at7/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204Os.35344.18.S1_x_at6/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28204OsAffx.31552.2.S1_at1/113+16208176..16215771transposon protein, putative, Mutator sub-class
LOC_Os03g28220OsAffx.10520.1.S1_at5/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.28003.2.S1_x_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.30450.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28220OsAffx.4453.1.S1_at1/113+16217411..16218047hypothetical protein
LOC_Os03g28230OsAffx.28003.1.S1_at11/113+16218955..16220402transposase, putative
LOC_Os03g28250Os.33920.1.S1_at7/113+16225941..16226280hypothetical protein
LOC_Os03g28260OsAffx.3354.1.S1_at11/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28260Os.11330.1.S2_at3/113+16229384..16231480Late embryogenesis abundant protein
LOC_Os03g28270Os.45238.1.S1_at11/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.11360.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28270Os.50390.1.S1_at1/113+16235900..16244028Leucine Rich Repeat family protein, expressed
LOC_Os03g28280OsAffx.22739.1.S1_at11/113+16248292..16248855hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11330.1.S2_at--286--4771Chr03:16230249..16230273 (25 bp)
GCTGCTTGATTACACATTGCTCTTA
LOC_Os03g28260
Os.11330.1.S2_at--894--9831Chr03:16230226..16230250 (25 bp)
TACAATGTCCAATATTAGCAGCGTC
LOC_Os03g28260
Os.11330.1.S2_at--893--10451Chr03:16230212..16230236 (25 bp)
TTAGCAGCGTCATTTCCGGCATCAT
LOC_Os03g28260
Os.11330.1.S2_at--141--6451Chr03:16229298..16229322 (25 bp)
GATCAGAGTGATCGTAGTTACGCAT
NONE
Os.11330.1.S2_at--95--6951Chr03:16229285..16229309 (25 bp)
GTAGTTACGCATATATACTTGCATG
NONE
Os.11330.1.S2_at--409--331Chr03:16229271..16229295 (25 bp)
ATACTTGCATGGAGCTAGTTTTAGA
NONE
Os.11330.1.S2_at--14--9811Chr03:16229245..16229269 (25 bp)
TAACCAGTGCATAATTTACTCTCAT
NONE
Os.11330.1.S2_at--93--191Chr03:16229232..16229256 (25 bp)
ATTTACTCTCATCTACGTGGCAAGC
NONE
Os.11330.1.S2_at--681--7531Chr03:16229216..16229240 (25 bp)
GTGGCAAGCCACTAGCATGCATGGT
NONE
Os.11330.1.S2_at--83--652Chr09:3954037..3954446 (25 bp)
ATGCATGGTACCACAACATATTTAC
NONE
Os.11330.1.S2_at--439--3711Chr03:16229167..16229191 (25 bp)
CTAGTGCAAGTTACAGCATTGGATC
NONE
Target Sequence 
GCTGCTTGATTACACATTGCTCTTACAATGTCCAATATTAGCAGCGTCATTTCCGGCATCATCAGCCGGCGGTGCTACGG
CGTGTACGCGCGGGCGGTGGTGACCACGNCGCGCCTCCGACGCAGCGGCGGCCGGCCGGCGAACGGACGTCGCTTCGGCG
GCGACGGCGGCGACGGCGAAGAGAGACGTGGCCTGGATGCGGGACCCGAAGACGGGGTGCTGGGCCCCGGAGAACCGGGT
GGATGAGGTGGACGCCGTCGACCTCCGCAACCTGCTGCTCAACTACAAGTGACTATATATATATANNGCTAATTGAAAGT
GAGAAAACCAAATTAATGATCGATCGATGGGTGGATCAGAGTGATCGTAGTTACGCATATATACTTGCATGGAGCTAGTT
TTAGAATAACCAGTGCATAATTTACTCTCATCTACGTGGCAAGCCACTAGCATGCATGGTACCACAACATATTTACTGCA
AGATCTAGTGCAAGTTACAGCATTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11330.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis